cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.9s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 350
progress 10% @chr2:18582868, elapsed 0.1s, est remaining 0.8s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 30
progress 15% @chr2:189060730, elapsed 0.1s, est remaining 0.8s, peak mem 181MB, user 0.0s, sys 0.0s, output queue size 4883
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 459
progress 25% @chr4:88390652, elapsed 0.2s, est remaining 0.7s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 10722
progress 30% @chr5:147394035, elapsed 0.3s, est remaining 0.6s, peak mem 208MB, user 0.0s, sys 0.0s, output queue size 3994
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.6s, peak mem 208MB, user 0.0s, sys 0.0s, output queue size 13933
progress 40% @chr7:128806688, elapsed 0.3s, est remaining 0.5s, peak mem 217MB, user 0.0s, sys 0.0s, output queue size 23424
progress 45% @chr9:2007196, elapsed 0.4s, est remaining 0.5s, peak mem 370MB, user 0.0s, sys 0.0s, output queue size 7276
progress 50% @chr10:32038163, elapsed 0.4s, est remaining 0.4s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 17208
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 442MB, user 0.0s, sys 0.1s, output queue size 27670
progress 60% @chr12:22493223, elapsed 0.5s, est remaining 0.3s, peak mem 445MB, user 0.0s, sys 0.1s, output queue size 37255
progress 65% @chr13:48515586, elapsed 0.5s, est remaining 0.3s, peak mem 475MB, user 0.0s, sys 0.1s, output queue size 48270
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.3s, peak mem 490MB, user 0.0s, sys 0.1s, output queue size 5302
progress 75% @chr16:30949290, elapsed 0.6s, est remaining 0.2s, peak mem 490MB, user 0.0s, sys 0.1s, output queue size 14865
progress 80% @chr17:42562612, elapsed 0.7s, est remaining 0.2s, peak mem 499MB, user 0.0s, sys 0.1s, output queue size 25559
progress 85% @chr19:5687282, elapsed 0.7s, est remaining 0.1s, peak mem 499MB, user 0.0s, sys 0.1s, output queue size 35971
progress 90% @chr19:55592450, elapsed 0.8s, est remaining 0.1s, peak mem 499MB, user 0.0s, sys 0.1s, output queue size 45469
progress 95% @chr22:36758311, elapsed 1.3s, est remaining 0.1s, peak mem 2452MB, user 7.7s, sys 4.5s, output queue size 78
progress 100% @chr6_GL000254v2_alt:3878686, elapsed 1.3s, est remaining 0.0s, peak mem 2452MB, user 7.7s, sys 4.5s, output queue size 9700
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047062
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.967 user 0.120 sys 2.226 real
done: 1 calls 0.306 user 0.109 sys 0.418 real
execute: 1 calls 0.011 user 0.000 sys 1.350 real
fetch_reads: 208647 calls 0.080 user 0.000 sys 0.185 real
fetch_ref: 2079 calls 0.011 user 0.013 sys 0.022 real
fetch_vcf: 2079 calls 0.788 user 0.049 sys 0.962 real
idle: 92 calls 0.003 user 0.001 sys 31.641 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 5.875 user 4.353 sys 10.980 real
overall: 2571284480 mem 12.298 user 10.075 sys 2.721 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory