cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.2s, est remaining 3.8s, peak mem 406MB, user 0.3s, sys 5.1s, output queue size 25
progress 10% @chr2:66000001, elapsed 0.4s, est remaining 3.3s, peak mem 805MB, user 0.6s, sys 10.1s, output queue size 41
progress 15% @chr2:233000001, elapsed 0.5s, est remaining 3.0s, peak mem 982MB, user 0.9s, sys 14.8s, output queue size 6
progress 20% @chr3:152000001, elapsed 0.7s, est remaining 2.7s, peak mem 1177MB, user 1.2s, sys 19.4s, output queue size 5
progress 25% @chr4:114000001, elapsed 0.8s, est remaining 2.5s, peak mem 1339MB, user 1.6s, sys 24.0s, output queue size 1
progress 30% @chr5:86000001, elapsed 1.0s, est remaining 2.3s, peak mem 1513MB, user 1.9s, sys 28.5s, output queue size 7
progress 35% @chr6:62000001, elapsed 1.2s, est remaining 2.2s, peak mem 1675MB, user 2.2s, sys 33.1s, output queue size 3
progress 40% @chr7:52000001, elapsed 1.4s, est remaining 2.0s, peak mem 1789MB, user 2.5s, sys 38.6s, output queue size 8
progress 45% @chr8:50000001, elapsed 1.6s, est remaining 1.9s, peak mem 1915MB, user 2.9s, sys 44.4s, output queue size 7
progress 50% @chr9:63000001, elapsed 1.8s, est remaining 1.8s, peak mem 2020MB, user 3.3s, sys 50.1s, output queue size 11
progress 55% @chr10:119000001, elapsed 2.0s, est remaining 1.6s, peak mem 2083MB, user 3.7s, sys 56.7s, output queue size 19
progress 60% @chr12:12000001, elapsed 2.2s, est remaining 1.5s, peak mem 2137MB, user 4.0s, sys 63.9s, output queue size 25
progress 65% @chr13:40000001, elapsed 2.5s, est remaining 1.3s, peak mem 2224MB, user 4.4s, sys 71.2s, output queue size 23
progress 70% @chr14:83000001, elapsed 2.7s, est remaining 1.2s, peak mem 2251MB, user 4.8s, sys 78.2s, output queue size 35
progress 75% @chr15:81000001, elapsed 3.0s, est remaining 1.0s, peak mem 2260MB, user 5.3s, sys 85.1s, output queue size 34
progress 80% @chr18:26000001, elapsed 3.2s, est remaining 0.8s, peak mem 2335MB, user 5.7s, sys 91.4s, output queue size 87
progress 85% @chr19:33000001, elapsed 3.5s, est remaining 0.6s, peak mem 2368MB, user 6.3s, sys 98.8s, output queue size 48
progress 90% @chrX:45000001, elapsed 4.0s, est remaining 0.4s, peak mem 2761MB, user 10.8s, sys 102.5s, output queue size 114
progress 95% @chrY:49000001, elapsed 4.2s, est remaining 0.2s, peak mem 2791MB, user 14.6s, sys 105.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.9s, est remaining 0.0s, peak mem 2797MB, user 32.0s, sys 109.1s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047062
output file size: 93248820
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.003 user 0.009 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.016 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.830 user 13.262 sys 15.541 real
done: 1 calls 0.324 user 0.551 sys 0.876 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.002 sys 7.965 real
fetch: 3219323 calls 0.290 user 12.841 sys 13.818 real
fetch_reads: 3219322 calls 0.453 user 13.040 sys 13.903 real
fetch_ref: 13004 calls 0.041 user 0.068 sys 0.082 real
fetch_vcf: 13004 calls 1.354 user 0.158 sys 1.774 real
idle: 1902 calls 1.658 user 0.292 sys 156.993 real
init: 1 calls 0.004 user 0.001 sys 0.022 real
update: 13229 calls 8.912 user 0.966 sys 10.553 real
write: 3219323 calls 13.696 user 13.641 sys 27.284 real
overall: 2933665792 mem 37.902 user 110.648 sys 10.229 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.001 sys 0.028 real
done: 1 calls 0.049 user 0.011 sys 0.060 real
idle: 61 calls 0.002 user 0.000 sys 31.300 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81887232 mem 0.079 user 0.034 sys 1.051 real