Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b2e244895daf29192da6642e514deb/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/c8c4e7a194461668a4973e157f4829/germline_control_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/26d0b09982f58438f78936207e1443/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/26d0b09982f58438f78936207e1443/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/c8c4e7a194461668a4973e157f4829/germline_control_1.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b2e244895daf29192da6642e514deb/germline_control_1.haplotyper.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   358 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_1.dv_only_sites.vcf.gz