Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6987106391a7258fd78808743484d9/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9091b606a653aca62f4442b4d2fbf2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6987106391a7258fd78808743484d9/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9091b606a653aca62f4442b4d2fbf2/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T16:54:07.256104Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:07.258219Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:07.258243Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:07.258249Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:07.258253Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4MOqS0'
[2026-06-04T16:54:07.258257Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:07.258262Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:07.258266Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:07.258272Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T16:54:07.258276Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:07.258280Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:07.258284Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:07.258288Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:07.258292Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:07.258892Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:07.259001Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:07.264695Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:07.265304Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:07.265484Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:07.265762Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:07.266030Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.266937Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.267045Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.267329Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.267720Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.267776Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.267940Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.268076Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.268503Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.268920Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.270399Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.270830Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:07.271053Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271209Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271327Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271393Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271506Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271572Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271682Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271744Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271924Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271993Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272104Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272171Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272573Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272693Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272816Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272879Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.272989Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273054Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273163Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273236Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273346Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273407Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273515Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273580Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273689Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273862Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274256Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274332Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274452Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274514Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274623Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274688Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274793Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274854Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.274994Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.275057Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.275218Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.275283Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.275767Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276129Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276302Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276382Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276526Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276598Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276741Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276817Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.276939Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.277018Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.277243Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.277699Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.277825Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.277902Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278026Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278100Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278226Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278298Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278419Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278488Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278611Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278686Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.278950Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.279797Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.281265Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.281392Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.281619Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282226Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282349Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282415Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282532Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282597Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282710Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282774Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282884Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.282951Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.283081Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.283160Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.283375Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.283981Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284106Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284171Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284280Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284358Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284479Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284543Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284659Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.284728Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.298444Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299180Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299246Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299498Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299570Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299669Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299733Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299860Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299927Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.299971Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:07.300410Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.301372Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.301841Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.302182Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.302915Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.303895Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.304753Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.305827Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.306879Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.311438Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:07.313863Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-04T16:54:07.317940Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:07.318360Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-04T16:54:07.322207Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:07.326742Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-04T16:54:07.327059Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:07.327141Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-04T16:54:07.374961Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.375971Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.378920Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-04T16:54:07.391834Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.391909Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.393019Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.393504Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.397287Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-04T16:54:07.398034Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:07.458003Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.458089Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.459055Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.459318Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.462832Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:07.464028Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-04T16:54:07.525209Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.526374Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.529790Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:07.640887Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.642299Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.645791Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:07.706747Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.708335Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.711203Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-04T16:54:08.173318Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.173421Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.174454Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.175145Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.178499Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-04T16:54:08.179469Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-04T16:54:08.742720Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.743673Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.746569Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-04T16:54:08.775818Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776851Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779389Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-04T16:54:08.891331Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.892475Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.895642Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:08.956608Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.956703Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.957660Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.958347Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.961511Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-04T16:54:08.962432Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:09.024570Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.024653Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.025625Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.026144Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.029233Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:09.030076Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:09.058236Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.059503Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.062387Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:09.091383Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.092364Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.095504Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:09.124813Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.124952Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.125876Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.126421Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.129467Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-04T16:54:09.160301Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.160366Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.161256Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.161549Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.164762Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-04T16:54:09.166029Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:09.226079Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.227079Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.229599Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:09.291482Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.292400Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.295251Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-04T16:54:09.457128Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.458127Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.461105Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-04T16:54:09.522571Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.523574Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.526422Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-04T16:54:09.988953Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.989886Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.993184Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:10.054179Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.055280Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.059079Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:10.169755Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.170876Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.173594Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:10.177315Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:10.178555Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.178601Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.179437Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.179835Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.183103Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-04T16:54:10.184338Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-04T16:54:10.212323Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.212407Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.212443Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.213243Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.213493Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.213962Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.217927Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-04T16:54:10.219291Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-04T16:54:10.220376Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-04T16:54:10.247861Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.248723Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.251185Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:10.256279Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.257022Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.259784Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:10.288826Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.289663Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.292404Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-04T16:54:10.321816Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.322626Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.325604Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:10.338529Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.339331Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.342060Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-04T16:54:10.371242Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.372362Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.372624Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.375263Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.375707Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:10.378360Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:10.439478Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.439561Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.440591Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.440857Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.443922Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:10.444522Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:10.505047Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.505126Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.505159Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.505895Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.507903Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.508818Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-04T16:54:10.510183Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.510925Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-04T16:54:10.513018Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:10.542899Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.543874Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.546601Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-04T16:54:10.551548Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.552366Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.555569Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-04T16:54:10.584152Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.584931Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.587702Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:10.600595Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.601259Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.603923Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:10.616985Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.617723Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.620357Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-04T16:54:10.633398Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.634025Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.636966Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-04T16:54:10.666394Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.667233Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.670500Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-04T16:54:10.699451Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.700438Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.703251Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:10.764671Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.765472Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.768111Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-04T16:54:10.798918Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.799907Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.803149Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:10.864210Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.864400Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.865596Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.865921Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.870280Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-04T16:54:10.871217Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-04T16:54:10.930310Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.931321Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.934135Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-04T16:54:11.145825Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.147122Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.150338Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:11.211507Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.212431Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.214901Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-04T16:54:11.278070Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.278152Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.278830Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.279242Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.282314Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-04T16:54:11.283117Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-04T16:54:11.343350Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.344059Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.346870Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-04T16:54:11.347580Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.348078Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.350909Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:11.380458Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.381128Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.384214Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-04T16:54:11.413025Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.413691Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.416760Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-04T16:54:11.417630Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.418213Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.420610Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-04T16:54:12.234426Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.235111Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.237947Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-04T16:54:12.268838Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.269459Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.272524Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-04T16:54:12.277480Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.278096Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.281285Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-04T16:54:12.310398Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.311036Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.313551Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.314396Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.314569Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:12.317237Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:12.346540Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.347451Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.350021Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-04T16:54:12.379360Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.380208Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.383094Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-04T16:54:12.544652Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.545661Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.548288Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-04T16:54:12.577529Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.578478Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.581415Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:12.642402Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.643155Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.645701Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:12.675013Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.675746Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.678813Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:12.679670Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.680465Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.682912Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-04T16:54:12.712360Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.713209Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.713519Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.714421Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.717367Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-04T16:54:12.718461Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:12.747601Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.747681Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.862065Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.862923Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.865717Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-04T16:54:12.878881Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.879444Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.881917Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-04T16:54:12.896528Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.904506Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.905007Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.907502Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-04T16:54:12.914173Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.946674Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.946750Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.947198Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.949838Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-04T16:54:12.979120Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.245801Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.246334Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.248976Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:14.278143Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.692830Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.693319Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.695631Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-04T16:54:14.725501Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.725797Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.725926Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.726568Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.727254Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.730291Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.731078Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.732920Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:14.760651Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.760703Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.760902Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.761273Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.764354Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.765014Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.765477Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.796590Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.796650Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.796809Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.799438Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:14.828906Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.898510Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:26.146513Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:26.146513Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] 
[2026-06-04T16:54:26.146513Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:26.146580Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] 
[2026-06-04T16:54:26.146588Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:26.146595Z] [nf-959091b606a653aca62f4442b4d2fbf2-40639-ghdb7] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec