.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr16_25246607-25247490.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/ac29b32e64fb6b2c1b9b957ffc620e/.command.err
Size: 53.7 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr16_25246607-25247490.bed)
Attempt
Content

[2026-06-04T16:54:13.067483Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:13.071261Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:13.071284Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:13.071290Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:13.071295Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXXM0vvX'
[2026-06-04T16:54:13.071299Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:13.071305Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:13.071308Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:13.071312Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:13.071316Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:13.071320Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:13.071324Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:13.071327Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:13.071331Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:13.072072Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:13.072218Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:13.080032Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:13.080951Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:13.081353Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:13.081559Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:13.081879Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082740Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082840Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082916Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.083480Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.083714Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.084064Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.084434Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.084547Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.087852Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:13.088273Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088399Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088539Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088606Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088725Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088826Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088945Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089014Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089129Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089191Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089872Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089959Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090075Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090146Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090260Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090325Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090440Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090504Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090626Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090695Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090812Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090891Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091619Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091749Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091862Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091928Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092050Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092117Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092246Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092310Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092433Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092497Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092609Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092676Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092873Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093016Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094481Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094615Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094732Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094802Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094906Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094976Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095087Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095149Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095271Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095333Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108193Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108301Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108381Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108531Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108607Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108696Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108764Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108873Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.108946Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.109007Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:13.118334Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.119125Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.119579Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.120215Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.120764Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.123344Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.123767Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:13.124279Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.127541Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.129058Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.133145Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:13.137245Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:13.143261Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:13.147373Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:13.148038Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:13.152681Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:13.153969Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:13.246423Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.246519Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.246557Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.247289Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.247638Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.248205Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.255306Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:13.263018Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:13.265061Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:13.320658Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.321367Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.326847Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:14.288792Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.289530Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.292771Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:14.354035Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.354998Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.359827Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:14.363875Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.364707Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.367780Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:14.397114Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.397885Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.401729Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:14.864333Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.865111Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.869264Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:14.980260Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.981237Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.984495Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:15.045917Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.047033Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.050698Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:15.111903Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.112616Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.116803Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:15.177379Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.178174Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.182479Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:15.443783Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.444587Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.448441Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:15.509430Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.510114Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.513645Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:15.574725Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.575491Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.578987Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:15.891026Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.891773Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.895407Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:15.956750Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.957523Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.961793Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:16.022850Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.023589Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.027549Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:16.088552Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.089287Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.093323Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:16.154187Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.154893Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.158895Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:16.219714Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.219838Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.220499Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.221089Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.224872Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:16.226209Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:16.285852Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.286099Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.286721Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.287156Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.291277Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:16.292160Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:16.353258Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.353939Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.357988Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:16.419002Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.419674Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.423630Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:16.484608Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.485258Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.489161Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:16.550390Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.551051Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.555349Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:16.583834Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.584438Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.588202Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:16.649311Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.649910Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.653574Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:17.166319Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.166959Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.170871Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:17.231867Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.232680Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.236990Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:17.297377Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.298140Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.302648Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:17.463140Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.463878Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.467814Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:17.729099Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.729707Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.733177Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:17.794402Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.795109Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.799565Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:17.859852Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.859942Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.860533Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.860948Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.864551Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:17.866579Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:17.893604Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.894222Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.898392Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:17.902439Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.902976Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.906912Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:17.907570Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.908078Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.912921Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:17.940463Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.940561Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.948312Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.265366Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.265945Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.269322Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:19.330423Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.394588Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.395172Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.398514Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:19.427472Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.428012Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.431270Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:19.431903Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.463848Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.878804Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.879396Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.883745Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:19.944592Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.159113Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.159669Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.163037Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:20.224345Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.224680Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.224899Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.225454Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.225936Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231208Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:20.231445Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:20.258810Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:20.259361Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.259415Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.259681Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.263072Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:20.263661Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.263938Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.267061Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:20.296103Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296191Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296463Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.299591Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:20.328582Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.648367Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:31.960017Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:31.960017Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] 
[2026-06-04T16:54:31.960017Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:31.960072Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] 
[2026-06-04T16:54:31.960080Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:31.960087Z] [nf-39ac29b32e64fb6b2c1b9b957ffc620e-62b6d-ldr4l] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec