HCC1395_BL/HCC1395_BL_basic_stats.tsv - Workdir - DAQ:BAM_POSTDEDUP_QC:SEQTOOL (HCC1395_BL)

Filename: HCC1395_BL/HCC1395_BL_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/4e3a8501fcf5bd326c3c1beeb4931c/HCC1395_BL/HCC1395_BL_basic_stats.tsv
Size: 1.3 KB
Task: DAQ:BAM_POSTDEDUP_QC:SEQTOOL (HCC1395_BL)
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
HCC1395_BL.md	999992	9	9e-06	853439	0.146554	426713	0.672452	0.327537	0.772698	0.227302	164	275	427	426416	0.999304	329491	96925	573897	279533	301.595461	123.55658	146553	0.982024	0.945774	0.945774	144359392	xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed	31	0.0	0.0	0.0	0.0	0.0	0.164524	0.341746	0.401986	0.693862	1.470801	0.962833	1.351509	0.905018	0.86383	0.903077	1.354504	0.892638	0.0	0.0	0.0	0.0	0.0	1.179182	1.736714	744.0	0.0	0.0	0.0	0.0	29.0	0.9974	0.999997	376613	98531	0.009939	0.0026	37892425	0.0	76	-15.3642	-0.0019	37922265

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