File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/dc9f5e4ca446c453032bef8f932e25/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3usr7pts because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:51,531 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:52,840 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:53,121 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:55,074 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:55,190 - cnv_pipe.batch.run_model - INFO - Processing cluster 735 with 198 probes
2026-06-04 16:59:55,897 - cnv_pipe.batch.run_model.cluster735 - INFO - Child process started for cluster 735 with 198 probes
2026-06-04 17:01:32,851 - cnv_pipe.batch.run_model.cluster735 - INFO - Child process finished cluster 735. Wrote cluster_735_samples.csv and cluster_735_params.csv
2026-06-04 17:01:32,853 - cnv_pipe.batch.run_model - INFO - Cluster 735 finished in 97.66 seconds. Status: SUCCESS