File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/9af9453f569eb37dc8b3305c970d4e/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXGiACVf/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXGiACVf/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXGiACVf/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T16:54:10.941021Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:10.942170Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:10.942183Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:10.942188Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:10.942193Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXGiACVf'
[2026-06-04T16:54:10.942197Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:10.942203Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:10.942207Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:10.942211Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:10.942215Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:10.942218Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:10.942222Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:10.942226Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:10.942229Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:10.943028Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:10.943151Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:10.949387Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:10.950479Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:10.950589Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:10.951019Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:10.951435Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.951932Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.952048Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.952128Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.952323Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.952713Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.953351Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.953617Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.953769Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.954923Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.955487Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.956452Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957031Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957365Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957453Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957623Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957703Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957869Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.957949Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.958249Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.958514Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.962623Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:10.962907Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.963044Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.963303Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.964875Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965372Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965472Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965638Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965738Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965890Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.965989Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.966221Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.966436Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967091Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967199Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967369Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967448Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967641Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967749Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967914Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.967995Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.968533Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.968990Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.970075Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.970560Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.970687Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.970841Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.970965Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971036Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971148Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971214Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971325Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971388Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971510Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971584Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.971984Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972459Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972584Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972649Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972763Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972826Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.972939Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.973001Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.973109Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.973414Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.989255Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.989463Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.989820Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.990774Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.990856Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.990951Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.991019Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.991141Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.991223Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.993378Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:10.997778Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.998428Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.998975Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.999615Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.000347Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.001297Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.002294Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.003286Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.004480Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.010092Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:11.013404Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:11.019740Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:11.023165Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:11.025764Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:11.028367Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:11.031469Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:11.032241Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:11.128124Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.128268Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.128292Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.129123Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.129714Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.130204Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.142573Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:11.143073Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:11.144459Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:12.153659Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.154701Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.158754Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:12.220058Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.221025Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.226163Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:12.938816Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.939958Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.944455Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:13.155788Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.157080Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.162432Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:13.523323Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.523437Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.524407Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.525148Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.531469Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:13.532945Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:13.741001Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741858Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745930Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:13.806988Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.808040Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.812006Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:13.841009Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.841946Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.846513Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:13.846728Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.847456Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.851154Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:13.880049Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.880945Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.885148Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:13.889791Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.890572Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.894590Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:13.923476Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.924420Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.929312Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:13.989907Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.990856Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.995511Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:14.056065Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.056972Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.061248Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:14.074089Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.075060Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.079125Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:15.094540Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.095461Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.101345Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:15.411482Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.411627Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.412410Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.412777Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.417628Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:15.418843Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:15.478094Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.478922Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.482864Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:15.483268Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.483809Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.488549Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:15.517654Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.518434Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.522567Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:15.683812Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.684783Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.688711Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:15.749878Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.750674Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.754676Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:15.783363Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.784114Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.788713Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:15.900021Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.900839Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.904420Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:15.965659Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.966482Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.971130Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:16.031244Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.032135Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.036081Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:16.097378Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.098266Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.101932Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:16.767551Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.768339Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.772594Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:16.833471Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.833604Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.834414Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.835114Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.840306Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:16.840690Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:16.901271Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.901996Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.906588Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:16.967053Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.967742Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.972015Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:17.083211Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.083325Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.083981Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.084475Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.088949Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:17.089919Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:17.149353Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.149473Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.150177Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.150574Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.154286Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:17.155117Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:17.215615Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.215718Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.216294Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.216983Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.221303Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:17.222812Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:17.281720Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.282357Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.285940Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:17.346915Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.347622Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.351672Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:17.412631Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.413290Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.417074Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:17.478403Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.478523Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.479088Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.479437Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.483935Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:17.485216Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:17.545182Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.545736Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.550026Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:17.611185Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.725873Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.726549Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.730191Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:17.791646Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.906422Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.907016Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.910639Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:17.971841Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.437835Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.438399Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.442284Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:18.503301Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.503409Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.503944Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.504469Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.508728Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:18.509883Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:18.570126Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.570251Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.634568Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.635112Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.638814Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:18.699697Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.731830Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.732368Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.735994Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:18.797003Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.563494Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.564045Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.567757Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:19.628919Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.629213Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.629397Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.629923Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.630498Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.634842Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.636202Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.636965Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:19.664539Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.664603Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.664626Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.664845Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.665351Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.668490Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.669022Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.697618Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.697706Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.697922Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.701505Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:19.730122Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.548852Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:29.830876Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:29.830876Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] 
[2026-06-04T16:54:29.830876Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:29.830976Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] 
[2026-06-04T16:54:29.830985Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:29.830992Z] [nf-999af9453f569eb37dc8b3305c970d4e-bdb5d-ch8j6] [675_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec