File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3b0c8e3edeac43e1d66ef606d3fff5/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3b0c8e3edeac43e1d66ef606d3fff5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/448667b5ccbe0b39d1a99e9a645079/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/448667b5ccbe0b39d1a99e9a645079/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3b0c8e3edeac43e1d66ef606d3fff5/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQLCL2y/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQLCL2y/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQLCL2y/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T16:54:08.080798Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:08.099139Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:08.099178Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:08.099183Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:08.099189Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQLCL2y'
[2026-06-04T16:54:08.099194Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:08.099200Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:08.099204Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:08.099208Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:08.099212Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:08.099216Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:08.099220Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:08.099225Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:08.099229Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:08.100040Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:08.100173Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:08.106240Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:08.107024Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:08.107284Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:08.107662Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:08.107934Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108313Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108413Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108487Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108606Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108674Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108796Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108859Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.108974Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.109100Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.109688Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.109861Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.110026Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.110760Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.112319Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.112724Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.112815Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.112992Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.113180Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:08.113447Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.113889Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.113961Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114077Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114147Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114328Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114406Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114535Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114602Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114712Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.114992Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115322Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115395Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115535Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115677Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115796Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115864Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.115977Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116039Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116162Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116229Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116508Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116877Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.116990Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.117056Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.117673Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.117736Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.117848Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.118001Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.118649Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.118716Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.118825Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.118890Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119001Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119068Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119185Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119247Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119361Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119427Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119533Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.119643Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120157Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120493Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120613Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120678Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120792Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.120863Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.136449Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137056Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137586Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137757Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137830Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137919Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.137988Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.138096Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.138170Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.139552Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:08.155692Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.156470Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.156834Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.157470Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.158148Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.158646Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.159722Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.160644Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.161482Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.164556Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:08.167055Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:08.171750Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:08.177108Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:08.179153Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:08.181157Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:08.182576Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:08.185632Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:08.330088Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.330172Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.330946Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.331399Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.336449Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:09.499131Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.499941Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.504114Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:09.614958Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.615065Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.615949Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.616860Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.621000Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:09.622684Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:09.682050Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.682941Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.687241Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:09.948841Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.948944Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.949742Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.950306Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.956171Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:09.957217Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:10.015438Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.016292Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.019790Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:10.080745Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.081890Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.086629Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:10.515013Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:10.548624Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.548739Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.549748Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.550365Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.554817Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:10.556003Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:10.615660Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.615773Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.616664Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.617182Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.623310Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:10.624564Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:11.032480Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.033680Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.038492Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:11.550990Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.551830Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.555971Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:11.556710Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.557784Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.561785Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:11.622856Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.623903Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.628816Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:11.889515Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.890461Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.895450Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:12.006124Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.006969Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.011343Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:12.172702Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.173543Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.177995Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:12.206870Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.207706Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.211591Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:12.273059Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.273851Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.278457Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:12.339074Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.339913Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.344871Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:12.457398Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.458306Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.461888Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:12.874622Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.875786Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.879497Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:12.908328Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.909185Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.913865Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:12.918432Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.919417Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.922512Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:12.952089Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.953168Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.957228Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:12.961625Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.962417Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.966168Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:13.027305Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.028314Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.033605Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:13.093410Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094198Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.099537Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:14.061612Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.062546Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.066768Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:14.127524Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.128353Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.132093Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:14.243411Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.244087Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.248151Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:14.309382Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.310123Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.314114Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:14.375349Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.376066Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.379803Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:14.408570Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.409269Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.413685Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:14.418143Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.418758Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.422392Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:14.451618Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.452348Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.455935Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:14.484865Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.485531Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.489931Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:14.490553Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.491082Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.494811Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:14.555810Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.556445Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.560085Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:14.671167Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.671721Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.676425Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:14.737603Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.738338Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.742361Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:14.803294Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.803938Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.808269Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:14.808886Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.809489Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.812764Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:14.874023Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.874172Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.874217Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.875204Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.875692Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.876145Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.881794Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:14.882872Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:14.885609Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:14.943061Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.943175Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.409174Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.409825Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.413560Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:15.474784Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.690390Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.690490Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.691039Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.691458Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.695471Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:15.696397Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:15.756683Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.757335Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.757703Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.761165Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:15.822329Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.288308Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.288943Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.293362Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:16.354694Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.723825Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.724872Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.728336Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:17.789650Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.104688Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.105417Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.109504Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:18.170392Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.170841Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.171081Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.171876Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.172726Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.176779Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:18.179163Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:18.180399Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:18.238133Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.238240Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.238264Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.238596Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.239114Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.243217Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:18.245206Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:18.274409Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.274527Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.274812Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.279166Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:18.340471Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.705968Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:26.988373Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:26.988373Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] 
[2026-06-04T16:54:26.988373Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:26.988443Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] 
[2026-06-04T16:54:26.988451Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:26.988459Z] [nf-083b0c8e3edeac43e1d66ef606d3fff5-7a2b9-8wq7h] [665_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec