Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8ee81d6b6b4fcd312c228fa48d406e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/de011271d21e566172ef895c40c277/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/de011271d21e566172ef895c40c277/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ziq1m8yt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:57:05,069 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:57:05,936 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:57:06,110 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:57:07,096 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:57:07,257 - cnv_pipe.batch.run_model - INFO - Processing cluster 70 with 177 probes
2026-06-04 16:57:07,643 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process started for cluster 70 with 177 probes
2026-06-04 16:58:03,667 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process finished cluster 70. Wrote cluster_70_samples.csv and cluster_70_params.csv
2026-06-04 16:58:03,669 - cnv_pipe.batch.run_model - INFO - Cluster 70 finished in 56.41 seconds. Status: SUCCESS