File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/eb0e3d636823f8c1be2f7acaf31dd4/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-abv3_3ln because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:51,445 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:52,796 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:53,083 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:54,831 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:54,946 - cnv_pipe.batch.run_model - INFO - Processing cluster 907 with 154 probes
2026-06-04 16:59:55,733 - cnv_pipe.batch.run_model.cluster907 - INFO - Child process started for cluster 907 with 154 probes
2026-06-04 17:01:13,938 - cnv_pipe.batch.run_model.cluster907 - INFO - Child process finished cluster 907. Wrote cluster_907_samples.csv and cluster_907_params.csv
2026-06-04 17:01:13,940 - cnv_pipe.batch.run_model - INFO - Cluster 907 finished in 78.99 seconds. Status: SUCCESS