File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/5655f06babe5240d5c73d64a7750b1/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qocn68ah because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:24,785 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:25,597 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:25,757 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:26,818 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:27,028 - cnv_pipe.batch.run_model - INFO - Processing cluster 806 with 72 probes
2026-06-04 16:59:27,401 - cnv_pipe.batch.run_model.cluster806 - INFO - Child process started for cluster 806 with 72 probes
2026-06-04 16:59:53,103 - cnv_pipe.batch.run_model.cluster806 - INFO - Child process finished cluster 806. Wrote cluster_806_samples.csv and cluster_806_params.csv
2026-06-04 16:59:53,103 - cnv_pipe.batch.run_model - INFO - Cluster 806 finished in 26.08 seconds. Status: SUCCESS