[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVeWIPA/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVeWIPA/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVeWIPA/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T16:54:08.254937Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:08.259976Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:08.259995Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:08.260000Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:08.260005Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVeWIPA'
[2026-06-04T16:54:08.260009Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:08.260015Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:08.260018Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:08.260022Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:08.260026Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:08.260030Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:08.260033Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:08.260037Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:08.260041Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:08.260806Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:08.260882Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:08.267824Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:08.269215Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:08.269455Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:08.270432Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:08.270956Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.271751Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.271893Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.271987Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.272301Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.272768Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.273024Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.273361Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.273540Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.274446Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.274902Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.275161Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.275238Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.275357Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.275426Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.275650Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.281431Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.282045Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:08.282606Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.282907Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283111Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283182Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283308Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283387Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283511Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283584Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283720Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283798Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.283948Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.284524Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.284981Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285361Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285480Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285543Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285660Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285726Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285834Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.285899Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286009Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286078Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286193Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286254Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286456Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287045Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287159Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287223Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287336Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287463Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287585Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287655Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287842Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287917Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.288031Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.288204Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.288840Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.288906Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289033Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289101Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289211Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289276Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289388Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289448Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289564Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289626Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289734Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.289862Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.290061Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.290693Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.290815Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.290881Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.290992Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.291060Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.291169Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.291233Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.293342Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.293936Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.294632Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.294713Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.294826Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.294891Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295015Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295079Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295193Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295263Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295370Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295442Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295559Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.295819Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.296844Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.296913Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297039Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297105Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297215Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297281Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297402Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.297463Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.311306Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315202Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315357Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315579Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315659Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315843Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.315917Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.316053Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.316130Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.316206Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:08.333696Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.334858Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.335495Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.336593Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.337786Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.340873Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.341960Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:08.342990Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.344993Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.350945Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.351412Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T16:54:08.359490Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:08.365304Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T16:54:08.371974Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:08.372351Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T16:54:08.378221Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T16:54:09.573438Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.573557Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.575059Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.575521Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.580397Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T16:54:09.582242Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T16:54:09.741014Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742131Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.745860Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:10.258238Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.259384Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.263258Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T16:54:10.491057Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T16:54:10.525270Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.525375Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.526860Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.527349Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.532469Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:10.533226Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:10.793096Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.794623Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.798307Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T16:54:10.859571Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.860776Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.864891Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:11.126478Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.128394Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.132946Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T16:54:11.193901Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.195109Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.199548Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:11.260101Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.261225Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.265463Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T16:54:11.326298Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.327443Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.331389Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:11.335833Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.337074Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.341025Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T16:54:11.369664Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.370773Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.374218Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:11.636352Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.637560Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.641582Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T16:54:12.154573Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.155732Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.160097Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T16:54:12.220906Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.222413Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.226590Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T16:54:12.488511Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.490082Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.494427Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T16:54:12.605838Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.607602Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.612229Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T16:54:12.873841Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.875512Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.880280Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T16:54:13.041129Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.042506Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.047512Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T16:54:13.108007Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.109585Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.114033Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T16:54:13.175593Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.175718Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.176738Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.177188Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.181443Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T16:54:13.182444Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T16:54:13.244180Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.244605Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.245590Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.245995Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.250152Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:13.251307Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T16:54:13.311426Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.312478Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.316373Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T16:54:13.377973Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.379280Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.383081Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T16:54:13.444338Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.444465Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.445622Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.446077Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.450415Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:13.451697Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:13.511510Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.512602Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.517281Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T16:54:14.030073Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.031000Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.035039Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T16:54:14.096283Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.096392Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.097652Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.098571Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.103447Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T16:54:14.105287Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T16:54:14.414655Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.415992Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.419932Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T16:54:14.420744Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.421955Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.425423Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T16:54:14.486556Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.486704Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.487964Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.488529Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.493629Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T16:54:14.495525Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:14.705397Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.706322Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.709878Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T16:54:14.771314Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.772289Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.776806Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T16:54:15.389911Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.390975Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.395053Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T16:54:15.407772Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.408701Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.412208Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:15.441346Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.442296Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.446561Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T16:54:15.451272Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.452114Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.455977Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T16:54:15.618279Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.619257Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.623109Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T16:54:15.627661Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.628470Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.632096Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T16:54:15.660970Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.661896Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.665668Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T16:54:15.726813Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.727763Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.731710Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:15.792755Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.793692Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.798207Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:15.859486Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.860435Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.863938Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T16:54:15.925155Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.926094Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.930492Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T16:54:16.192254Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.193157Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.196957Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T16:54:16.258238Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.259123Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.263436Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T16:54:16.425098Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.426150Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.430241Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:16.442879Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.443700Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.448219Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:16.509364Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.510261Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.515682Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T16:54:16.625570Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.625691Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.626585Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.627523Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.631516Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T16:54:16.633088Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T16:54:16.692799Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.693675Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.697453Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:16.702120Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.702892Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.707138Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T16:54:16.767641Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.768516Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.772163Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:16.833558Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.833671Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.834523Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.835074Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.839359Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:16.840470Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:16.900663Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.901547Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.905766Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T16:54:17.167656Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.168522Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.172403Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T16:54:17.233478Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.234415Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.238417Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T16:54:17.299576Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.300420Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.303984Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T16:54:17.365397Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.366139Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.369938Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T16:54:17.431217Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.431337Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.432009Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.432457Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.436462Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:17.437343Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:17.497483Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.497590Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.498195Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.498689Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.504111Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:17.506006Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:17.565653Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.565776Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.566507Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.567120Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.571086Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:17.572459Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T16:54:17.632507Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.632611Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.632647Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.633350Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.633716Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.634065Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.638869Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T16:54:17.641600Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T16:54:17.677680Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T16:54:17.699913Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.700045Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.700721Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.701084Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.705462Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:17.706229Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T16:54:17.765682Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.765787Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.766446Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.766803Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.770557Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:17.771838Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:17.831443Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.831543Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.831601Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.832278Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.835396Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:17.896785Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.929044Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.929747Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.933244Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T16:54:17.994588Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.994673Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.995240Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.998729Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T16:54:18.059921Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.676012Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.676691Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.680178Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T16:54:18.741287Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.749397Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.749908Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.753247Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T16:54:18.814723Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.929609Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.930283Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.933677Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:18.994900Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.995303Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.995494Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.995889Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.996164Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.001257Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.002813Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.003770Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:19.028499Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.028789Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.031335Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.031717Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.032385Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.034049Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.035142Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.065727Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.065802Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.065983Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.068736Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:19.097986Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.222536Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:41.380559Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:41.380559Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] 
[2026-06-04T16:54:41.380559Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:41.380624Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] 
[2026-06-04T16:54:41.380631Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:41.380639Z] [nf-308a98062ab566c54cc3df9594260ef6-3bdd6-w9mpd] [619_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec