File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/22ba836ab04836f48ead46d134fb26/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-aiqo977s because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:05:24,496 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:05:25,285 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:05:25,442 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:05:26,372 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:05:26,447 - cnv_pipe.batch.run_model - INFO - Processing cluster 2629 with 190 probes
2026-06-04 17:05:26,899 - cnv_pipe.batch.run_model.cluster2629 - INFO - Child process started for cluster 2629 with 190 probes
2026-06-04 17:06:20,383 - cnv_pipe.batch.run_model.cluster2629 - INFO - Child process finished cluster 2629. Wrote cluster_2629_samples.csv and cluster_2629_params.csv
2026-06-04 17:06:20,384 - cnv_pipe.batch.run_model - INFO - Cluster 2629 finished in 53.94 seconds. Status: SUCCESS