cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.9s, peak mem 85MB, user 0.0s, sys 0.2s, output queue size 2113
progress 10% @chr15:40898907, elapsed 0.1s, est remaining 0.8s, peak mem 94MB, user 0.1s, sys 0.3s, output queue size 4352
progress 15% @chr15:63911908, elapsed 0.1s, est remaining 0.8s, peak mem 106MB, user 0.1s, sys 0.5s, output queue size 6970
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.7s, peak mem 112MB, user 0.2s, sys 0.7s, output queue size 799
progress 25% @chr16:1947194, elapsed 0.2s, est remaining 0.6s, peak mem 118MB, user 0.2s, sys 0.8s, output queue size 2485
progress 30% @chr16:23525127, elapsed 0.3s, est remaining 0.6s, peak mem 130MB, user 0.2s, sys 1.0s, output queue size 4967
progress 35% @chr16:66566514, elapsed 0.3s, est remaining 0.6s, peak mem 144MB, user 0.2s, sys 1.2s, output queue size 7571
progress 40% @chr16:89286670, elapsed 0.4s, est remaining 0.6s, peak mem 151MB, user 0.3s, sys 1.3s, output queue size 10044
progress 45% @chr17:10312574, elapsed 0.4s, est remaining 0.5s, peak mem 162MB, user 0.4s, sys 1.5s, output queue size 12659
progress 50% @chr17:36330448, elapsed 0.5s, est remaining 0.5s, peak mem 175MB, user 0.4s, sys 1.7s, output queue size 15255
progress 55% @chr17:45115344, elapsed 0.5s, est remaining 0.4s, peak mem 184MB, user 0.4s, sys 1.9s, output queue size 17498
progress 60% @chr17:68395073, elapsed 0.6s, est remaining 0.4s, peak mem 192MB, user 0.4s, sys 2.0s, output queue size 20027
progress 65% @chr18:5890198, elapsed 0.6s, est remaining 0.3s, peak mem 204MB, user 0.5s, sys 2.2s, output queue size 22747
progress 70% @chr18:62558687, elapsed 0.7s, est remaining 0.3s, peak mem 213MB, user 0.5s, sys 2.4s, output queue size 25125
progress 75% @chr19:6919548, elapsed 0.7s, est remaining 0.2s, peak mem 222MB, user 0.6s, sys 2.6s, output queue size 27512
progress 80% @chr19:15263420, elapsed 0.8s, est remaining 0.2s, peak mem 231MB, user 0.6s, sys 2.7s, output queue size 29770
progress 85% @chr19:36914965, elapsed 0.8s, est remaining 0.1s, peak mem 238MB, user 0.6s, sys 3.0s, output queue size 32088
progress 90% @chr19:46469733, elapsed 0.9s, est remaining 0.1s, peak mem 247MB, user 0.7s, sys 3.3s, output queue size 34263
progress 95% @chr20:36912423, elapsed 0.9s, est remaining 0.0s, peak mem 258MB, user 0.7s, sys 3.5s, output queue size 36893
progress 100% @chr20:62564989, elapsed 1.0s, est remaining 0.0s, peak mem 270MB, user 0.8s, sys 3.8s, output queue size 39334
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692765
output file size: 22307
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.001 user 0.015 sys 0.015 real
advance: 49760 calls 0.008 user 0.000 sys 0.021 real
calc: 97912 calls 0.000 user 0.009 sys 0.015 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.001 sys 1.907 real
fetch: 97912 calls 0.009 user 0.001 sys 0.015 real
fetch_ref: 97912 calls 0.105 user 0.041 sys 0.336 real
idle: 39 calls 0.004 user 0.007 sys 23.644 real
init: 1 calls 0.041 user 0.010 sys 0.043 real
region: 97912 calls 0.000 user 0.005 sys 0.016 real
tracker: 97912 calls 0.056 user 0.003 sys 0.084 real
overall: 284901376 mem 1.319 user 5.830 sys 3.031 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory