cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 3002
progress 10% @chr2:19997134, elapsed 0.1s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 13034
progress 15% @chr2:189053895, elapsed 0.1s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 3408
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 13867
progress 25% @chr4:88074812, elapsed 0.3s, est remaining 0.8s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 24140
progress 30% @chr5:147405610, elapsed 0.3s, est remaining 0.7s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 34188
progress 35% @chr6:127148841, elapsed 0.4s, est remaining 0.7s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 44132
progress 40% @chr7:128811800, elapsed 0.4s, est remaining 0.6s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 53614
progress 45% @chr9:732378, elapsed 0.5s, est remaining 0.6s, peak mem 335MB, user 0.0s, sys 0.1s, output queue size 7261
progress 50% @chr10:32026460, elapsed 0.6s, est remaining 0.6s, peak mem 335MB, user 0.0s, sys 0.1s, output queue size 17210
progress 55% @chr11:48216810, elapsed 0.6s, est remaining 0.5s, peak mem 335MB, user 0.0s, sys 0.1s, output queue size 27675
progress 60% @chr12:21933782, elapsed 0.7s, est remaining 0.4s, peak mem 344MB, user 0.0s, sys 0.1s, output queue size 37222
progress 65% @chr13:49145778, elapsed 0.7s, est remaining 0.4s, peak mem 344MB, user 0.0s, sys 0.1s, output queue size 48273
progress 70% @chr15:42684116, elapsed 0.8s, est remaining 0.3s, peak mem 353MB, user 0.0s, sys 0.1s, output queue size 58333
progress 75% @chr16:30737049, elapsed 0.9s, est remaining 0.3s, peak mem 353MB, user 0.0s, sys 0.1s, output queue size 67881
progress 80% @chr17:42562412, elapsed 0.9s, est remaining 0.2s, peak mem 353MB, user 0.0s, sys 0.1s, output queue size 78567
progress 85% @chr19:5206369, elapsed 1.0s, est remaining 0.2s, peak mem 398MB, user 0.0s, sys 0.1s, output queue size 88976
progress 90% @chr19:55692686, elapsed 1.0s, est remaining 0.1s, peak mem 398MB, user 0.0s, sys 0.1s, output queue size 98471
progress 95% @chr22:37011027, elapsed 1.5s, est remaining 0.1s, peak mem 2477MB, user 7.3s, sys 3.5s, output queue size 3224
progress 100% @chrY:57196336, elapsed 1.5s, est remaining 0.0s, peak mem 2477MB, user 7.4s, sys 3.5s, output queue size 3037
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813904
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.078 user 0.122 sys 2.501 real
done: 1 calls 0.356 user 0.079 sys 0.434 real
execute: 1 calls 0.013 user 0.001 sys 1.537 real
fetch_reads: 208647 calls 0.117 user 0.001 sys 0.196 real
fetch_ref: 2048 calls 0.015 user 0.016 sys 0.046 real
fetch_vcf: 2048 calls 0.786 user 0.047 sys 1.038 real
idle: 90 calls 0.003 user 0.001 sys 31.820 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 5.043 user 3.268 sys 8.945 real
overall: 2598166528 mem 11.646 user 14.084 sys 2.914 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory