cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144255509, elapsed 0.1s, est remaining 1.1s, peak mem 72MB, user 0.0s, sys 0.2s, output queue size 2018
progress 10% @chr9:36923323, elapsed 0.1s, est remaining 0.9s, peak mem 75MB, user 0.0s, sys 0.3s, output queue size 4237
progress 15% @chr9:96758778, elapsed 0.1s, est remaining 0.8s, peak mem 78MB, user 0.1s, sys 0.5s, output queue size 280
progress 20% @chr9:128940369, elapsed 0.2s, est remaining 0.8s, peak mem 84MB, user 0.1s, sys 0.6s, output queue size 2898
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.7s, peak mem 90MB, user 0.1s, sys 0.8s, output queue size 5652
progress 30% @chr10:69198372, elapsed 0.3s, est remaining 0.7s, peak mem 105MB, user 0.2s, sys 1.1s, output queue size 8039
progress 35% @chr10:100506040, elapsed 0.4s, est remaining 0.7s, peak mem 111MB, user 0.2s, sys 1.3s, output queue size 10695
progress 40% @chr11:294556, elapsed 0.4s, est remaining 0.6s, peak mem 126MB, user 0.3s, sys 1.5s, output queue size 13279
progress 45% @chr11:17781670, elapsed 0.6s, est remaining 0.7s, peak mem 129MB, user 0.3s, sys 1.7s, output queue size 15432
progress 50% @chr11:61420470, elapsed 0.7s, est remaining 0.7s, peak mem 132MB, user 0.3s, sys 1.8s, output queue size 17797
progress 55% @chr11:73000990, elapsed 0.9s, est remaining 0.8s, peak mem 138MB, user 0.4s, sys 2.0s, output queue size 20469
progress 60% @chr11:114401698, elapsed 1.0s, est remaining 0.7s, peak mem 144MB, user 0.4s, sys 2.2s, output queue size 22759
progress 65% @chr12:6462034, elapsed 1.0s, est remaining 0.6s, peak mem 150MB, user 0.4s, sys 2.5s, output queue size 25118
progress 70% @chr12:31667647, elapsed 1.1s, est remaining 0.5s, peak mem 156MB, user 0.5s, sys 2.7s, output queue size 27208
progress 75% @chr12:55966831, elapsed 1.2s, est remaining 0.4s, peak mem 156MB, user 0.6s, sys 2.8s, output queue size 29684
progress 80% @chr12:100059850, elapsed 1.3s, est remaining 0.3s, peak mem 156MB, user 0.6s, sys 3.0s, output queue size 32418
progress 85% @chr12:123783947, elapsed 1.5s, est remaining 0.3s, peak mem 162MB, user 0.7s, sys 3.2s, output queue size 35274
progress 90% @chr13:48459668, elapsed 1.6s, est remaining 0.2s, peak mem 171MB, user 0.8s, sys 3.3s, output queue size 37642
progress 95% @chr14:22767958, elapsed 1.6s, est remaining 0.1s, peak mem 180MB, user 0.8s, sys 3.5s, output queue size 39898
progress 100% @chr14:55646973, elapsed 1.7s, est remaining 0.0s, peak mem 189MB, user 0.8s, sys 3.7s, output queue size 42449
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692765
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.000 sys 0.019 real
advance: 50143 calls 0.011 user 0.008 sys 0.024 real
calc: 98785 calls 0.000 user 0.000 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.002 sys 3.342 real
fetch: 98785 calls 0.013 user 0.001 sys 0.020 real
fetch_ref: 98785 calls 0.058 user 0.039 sys 0.407 real
idle: 51 calls 0.009 user 0.014 sys 32.233 real
init: 1 calls 0.049 user 0.001 sys 0.043 real
region: 98785 calls 0.005 user 0.005 sys 0.023 real
tracker: 98785 calls 0.017 user 0.002 sys 0.096 real
overall: 201461760 mem 1.472 user 6.394 sys 4.489 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory