Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8ee81d6b6b4fcd312c228fa48d406e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4b1a36e4be9ddc51f10a251867b672/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4b1a36e4be9ddc51f10a251867b672/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-uotl2vzk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:58,626 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:59,502 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:59,699 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:00:00,696 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:00:00,850 - cnv_pipe.batch.run_model - INFO - Processing cluster 1034 with 199 probes
2026-06-04 17:00:01,233 - cnv_pipe.batch.run_model.cluster1034 - INFO - Child process started for cluster 1034 with 199 probes
2026-06-04 17:01:00,909 - cnv_pipe.batch.run_model.cluster1034 - INFO - Child process finished cluster 1034. Wrote cluster_1034_samples.csv and cluster_1034_params.csv
2026-06-04 17:01:00,910 - cnv_pipe.batch.run_model - INFO - Cluster 1034 finished in 60.06 seconds. Status: SUCCESS