.command.sh - Workdir - DAQ:CAT_FASTQ (Sig_18_tissue)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/5bd7caded08730a5f4449e33e635f0/.command.sh
Size: 821 bytes
Task: DAQ:CAT_FASTQ (Sig_18_tissue)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cat Sig_18_tissue_S3_L001_R1_001.fastq.gz Sig_18_tissue_S3_L002_R1_001.fastq.gz Sig_18_tissue_S3_L003_R1_001.fastq.gz Sig_18_tissue_S3_L004_R1_001.fastq.gz Sig_18_tissue_S3_L005_R1_001.fastq.gz Sig_18_tissue_S3_L006_R1_001.fastq.gz Sig_18_tissue_S3_L007_R1_001.fastq.gz Sig_18_tissue_S3_L008_R1_001.fastq.gz > Sig_18_tissue_R1.fastq.gz
cat Sig_18_tissue_S3_L001_R2_001.fastq.gz Sig_18_tissue_S3_L002_R2_001.fastq.gz Sig_18_tissue_S3_L003_R2_001.fastq.gz Sig_18_tissue_S3_L004_R2_001.fastq.gz Sig_18_tissue_S3_L005_R2_001.fastq.gz Sig_18_tissue_S3_L006_R2_001.fastq.gz Sig_18_tissue_S3_L007_R2_001.fastq.gz Sig_18_tissue_S3_L008_R2_001.fastq.gz > Sig_18_tissue_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS