.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9b80d55f63a29fe96f3b3e48fd5165/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9b80d55f63a29fe96f3b3e48fd5165/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9b80d55f63a29fe96f3b3e48fd5165/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T16:54:13.803479Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:13.804137Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:13.804149Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:13.804154Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:13.804158Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXl06Sgv'
[2026-06-04T16:54:13.804162Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:13.804167Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:13.804171Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:13.804174Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:13.804178Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:13.804182Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:13.804186Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:13.804189Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:13.804193Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:13.805091Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:13.805236Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:13.811708Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:13.812668Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:13.812899Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:13.813129Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:13.813434Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.813875Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.813972Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814043Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814173Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814242Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814361Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814423Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.814811Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.815169Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.815202Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.815551Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.815626Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.815776Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.816110Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.816782Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.818736Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.819207Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:13.819656Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.820255Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.820559Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.820642Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.820762Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.820859Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821031Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821192Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821706Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821787Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821914Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.821983Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822097Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822165Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822303Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822371Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822497Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822565Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.822849Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.823163Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.823759Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824148Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824577Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824655Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824774Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824840Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.824962Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825028Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825144Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825298Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825417Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825482Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.825861Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826222Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826337Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826401Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826524Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826586Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826711Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826776Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826883Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.826949Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827061Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827124Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827353Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827811Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827926Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.827997Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828112Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828176Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828301Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828368Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828491Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828562Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828672Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.828740Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.830279Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.830863Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.830998Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831068Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831181Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831246Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831370Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831535Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831664Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831727Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.831879Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.832066Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.832768Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.832853Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.832962Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833027Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833142Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833254Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833367Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833429Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833544Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.833606Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.850208Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.850797Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.850923Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.851109Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.852209Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.852390Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.852556Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.852798Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.853494Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.853750Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.854243Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.854565Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.855796Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.856564Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.856863Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.857600Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.857949Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.859013Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:13.860109Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.863174Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:13.866994Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T16:54:13.871034Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T16:54:13.873604Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T16:54:13.878818Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T16:54:13.879467Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:13.882537Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T16:54:13.888007Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T16:54:14.301861Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.302930Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.307154Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T16:54:14.718678Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.719803Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.724440Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T16:54:14.784483Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.785598Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.789921Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:14.900518Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.901617Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.906308Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:14.967211Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.968340Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.972846Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:15.033789Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.034929Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.038626Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T16:54:15.099895Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.099995Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.101076Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.101616Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.106941Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T16:54:15.108244Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T16:54:15.167705Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.168842Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.173519Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T16:54:15.636194Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.637669Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.642520Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T16:54:16.254368Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.255787Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.259725Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T16:54:16.288755Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.290779Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.291492Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.294178Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.298623Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:16.300257Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T16:54:16.660188Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.661339Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.665304Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T16:54:16.726433Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.727618Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.732614Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T16:54:16.744543Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.745691Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.749645Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T16:54:16.811009Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.812253Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.815900Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T16:54:16.876997Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.878148Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.883048Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:16.943536Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.944500Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.948486Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T16:54:17.009407Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.010529Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.015016Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T16:54:17.125611Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.125724Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.126770Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.129037Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.131528Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T16:54:17.132737Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T16:54:17.193976Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.195284Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.198765Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T16:54:17.259781Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.259887Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.261104Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.261618Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.266443Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T16:54:17.268415Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T16:54:17.327236Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.327326Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.328495Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.328921Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.333547Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T16:54:17.334638Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T16:54:17.443803Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.444802Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.448989Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:17.760365Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.761351Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.766605Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T16:54:17.826433Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.827437Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.831229Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T16:54:17.860037Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.861355Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.861794Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.864327Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.866168Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T16:54:17.867337Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:17.928780Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.929748Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.933226Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T16:54:18.646594Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.646686Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.647555Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.647944Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.651493Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T16:54:18.652658Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T16:54:18.713227Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.713358Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.714692Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.715600Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.721811Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T16:54:18.722595Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:18.830281Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.830388Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.831539Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.832049Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.835618Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T16:54:18.836907Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:18.896632Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.896757Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.897872Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.898248Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.903364Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T16:54:19.063364Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.064734Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.070058Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T16:54:19.130028Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.131113Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.135376Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:19.195793Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.196843Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.200586Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T16:54:19.261699Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.262814Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.266186Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:19.327580Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.328677Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.332348Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T16:54:19.361262Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.362632Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.366671Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T16:54:19.427059Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.428291Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.432192Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T16:54:19.643401Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.644428Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.648322Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:19.709340Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.709458Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.710539Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.711069Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.715674Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T16:54:19.717255Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:19.775968Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T16:54:19.776493Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.776573Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.777902Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.779282Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.784475Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:19.785886Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T16:54:19.895440Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.896458Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.900055Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T16:54:19.960984Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.962629Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.967023Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T16:54:20.378610Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.379670Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.384242Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:20.445255Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.446323Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.449907Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:20.511082Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.512183Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.516340Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:20.520755Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.521711Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.525084Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T16:54:20.686337Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.687319Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.690762Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T16:54:20.751958Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.752978Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.756514Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T16:54:20.769478Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.770437Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.773629Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:20.834946Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.836214Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.840208Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T16:54:20.901114Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.901238Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.902271Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.903010Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.908492Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:20.909582Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T16:54:21.069521Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.070436Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.073843Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T16:54:21.134934Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.135814Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.138980Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T16:54:21.200424Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.200538Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.201563Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.202334Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.205924Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:21.206982Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:21.267003Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.267857Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.271460Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T16:54:21.332430Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.333288Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.336194Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T16:54:21.397611Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.398299Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.402075Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:21.512948Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.513660Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.517228Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:21.578423Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.579129Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.582919Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:21.644105Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.644782Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.648899Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:21.709641Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.710303Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.714510Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:21.775434Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.776139Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.779343Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:21.840755Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.840851Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.840878Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.841596Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.842027Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.843000Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.847823Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:21.850011Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T16:54:21.851108Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:21.911031Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.911158Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.911189Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.911836Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.912255Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.916375Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T16:54:21.918155Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T16:54:21.979637Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.979746Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.983349Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.983756Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.987465Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T16:54:22.048644Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.463930Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.464519Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.469224Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:22.530327Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.530420Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.530989Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.534325Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:22.596258Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.861014Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.861710Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.865154Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T16:54:22.926614Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.241632Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.242205Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.245905Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T16:54:23.306844Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.307195Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.307362Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.307839Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.308360Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.312883Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:23.314309Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:23.315281Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:23.341233Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.341598Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.344436Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:23.345272Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.345307Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.345461Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.347780Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:23.377314Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.377388Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.377564Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.380719Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:23.409977Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.426177Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:32.693190Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:32.693190Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] 
[2026-06-04T16:54:32.693190Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:32.693276Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] 
[2026-06-04T16:54:32.693285Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:32.693292Z] [nf-8d9b80d55f63a29fe96f3b3e48fd5165-ccae2-pn74b] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec