File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/4f9e5655d61759e100cca020dc1cf3/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T16:54:10.466588Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:10.467333Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:10.467356Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:10.467361Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:10.467366Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDZpzpQ'
[2026-06-04T16:54:10.467370Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:10.467376Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:10.467380Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:10.467384Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T16:54:10.467387Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:10.467391Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:10.467394Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:10.467398Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:10.467402Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:10.468061Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:10.468149Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:10.474148Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:10.474894Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:10.475071Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:10.475239Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:10.475470Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.476625Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.476698Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.476967Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.477082Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.477768Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.478025Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.478336Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.480381Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.480500Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:10.480970Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481257Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481386Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481463Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481593Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481671Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481800Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481873Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.481994Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.482066Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.482356Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.482527Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.482874Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.482953Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.483089Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.483163Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.483684Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.483757Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.483980Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484285Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484438Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484564Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484697Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484773Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484909Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.484985Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485122Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485200Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485333Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485419Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485782Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486207Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486343Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486419Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486548Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486672Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486811Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.486963Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.487106Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.487192Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.487428Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.487929Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488070Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488142Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488267Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488343Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488467Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488542Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488664Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488735Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488861Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.488951Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.489718Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.490336Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.509455Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.510107Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.510847Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.511076Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.511186Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.511702Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.512022Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.512792Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.513069Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.513769Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.515804Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.516234Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.516879Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.517571Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.519899Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:10.520522Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.521104Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.521583Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:10.521932Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.523423Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:10.527501Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:10.531277Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:10.532680Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:10.539697Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:10.541360Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:10.541707Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:10.542069Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:10.604053Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.604141Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.604163Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.604893Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.605160Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.605676Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.608511Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.609240Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:10.611936Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:10.613829Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.614638Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:10.617435Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:10.646434Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.647532Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.647764Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.649087Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.652797Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:10.654234Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:10.763730Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.764712Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.767905Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:10.929568Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.930638Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.933681Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:11.145283Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.146178Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.149676Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:11.179430Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.180316Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.183760Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:11.212455Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.213460Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.216439Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:11.221118Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.221893Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.224873Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:11.237560Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.238293Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.241129Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:11.452794Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.453539Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.456370Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:11.485400Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.486148Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.489252Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:11.550402Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.551146Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.553837Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:11.566991Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.567682Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.570634Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:11.583816Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.584539Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.587393Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:11.616791Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.616898Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.617551Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.618242Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.621258Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:11.622362Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:11.635385Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.636098Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.638963Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:11.644015Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.644635Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.647054Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:11.652450Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.652528Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.653077Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.653351Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.656017Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:11.658420Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:11.718065Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.718772Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.721744Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:11.782773Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.783469Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.786436Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:11.847861Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.848649Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.851852Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:11.962994Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.963653Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.966363Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:11.995724Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.996398Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.999458Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:12.161344Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.162074Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.165513Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:12.226499Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.227303Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.230349Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:12.259175Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.259828Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.262716Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:12.276036Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.276656Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.279142Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:12.309808Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.310466Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.313328Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:12.318464Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.319031Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.321680Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:12.351303Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.351399Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.351962Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.352532Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.355508Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:12.356538Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:12.417064Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.417701Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.420909Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:12.532364Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.533012Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.535925Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:12.540945Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.541507Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.544159Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:12.573894Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.574019Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.574569Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.575192Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.578533Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:12.579592Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:12.608642Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.609245Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.612063Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:12.613139Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.613599Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.616317Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:12.645462Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.645998Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.649145Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:12.678474Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.678569Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.679050Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.680875Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.682455Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:12.683420Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:12.713644Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.714199Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.716820Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:12.746419Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.161786Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.162274Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.165209Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:13.177988Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.179055Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.181860Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:13.211466Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.215069Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.379252Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.379707Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.382585Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:13.443965Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.608695Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.609191Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.611688Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:13.641438Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.641521Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.641936Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.645011Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:13.675320Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.989972Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.990360Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.992935Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:14.054276Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.218901Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.219376Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.221899Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:14.283493Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.283817Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.284002Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.284352Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.286336Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.287219Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.289752Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.290785Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:14.320107Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.320194Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.320217Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.320439Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.320695Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.322996Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.323888Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.353426Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.353497Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.353695Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.355883Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:14.417546Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.185093Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:21.010126Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:21.010126Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] 
[2026-06-04T16:54:21.010126Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:21.010199Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] 
[2026-06-04T16:54:21.010206Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:21.010211Z] [nf-754f9e5655d61759e100cca020dc1cf3-01dc8-92fht] [603_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec