File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3f31dec78a658908d72d8d10951d49/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:142000001, elapsed 0.0s, est remaining 0.7s, peak mem 96MB, user 0.1s, sys 0.7s, output queue size 19
progress 10% @chr2:73000001, elapsed 0.1s, est remaining 0.6s, peak mem 96MB, user 0.2s, sys 1.5s, output queue size 7
progress 15% @chr2:224000001, elapsed 0.1s, est remaining 0.6s, peak mem 96MB, user 0.5s, sys 2.5s, output queue size 11
progress 20% @chr3:147000001, elapsed 0.2s, est remaining 0.7s, peak mem 96MB, user 0.7s, sys 4.0s, output queue size 9
progress 25% @chr4:116000001, elapsed 0.2s, est remaining 0.7s, peak mem 96MB, user 0.8s, sys 5.6s, output queue size 27
progress 30% @chr5:79000001, elapsed 0.3s, est remaining 0.7s, peak mem 96MB, user 0.9s, sys 7.3s, output queue size 42
progress 35% @chr6:58000001, elapsed 0.3s, est remaining 0.6s, peak mem 96MB, user 1.0s, sys 8.9s, output queue size 7
progress 40% @chr7:80000001, elapsed 0.4s, est remaining 0.6s, peak mem 96MB, user 1.1s, sys 10.4s, output queue size 6
progress 45% @chr8:48000001, elapsed 0.4s, est remaining 0.5s, peak mem 96MB, user 1.2s, sys 12.1s, output queue size 9
progress 50% @chr9:64000001, elapsed 0.5s, est remaining 0.5s, peak mem 96MB, user 1.3s, sys 13.6s, output queue size 11
progress 55% @chr10:86000001, elapsed 0.6s, est remaining 0.5s, peak mem 96MB, user 1.4s, sys 15.1s, output queue size 13
progress 60% @chr11:112000001, elapsed 0.6s, est remaining 0.4s, peak mem 96MB, user 1.5s, sys 16.7s, output queue size 18
progress 65% @chr13:10000001, elapsed 0.7s, est remaining 0.4s, peak mem 96MB, user 1.6s, sys 18.3s, output queue size 22
progress 70% @chr14:49000001, elapsed 0.7s, est remaining 0.3s, peak mem 96MB, user 1.7s, sys 20.0s, output queue size 21
progress 75% @chr16:6000001, elapsed 0.8s, est remaining 0.3s, peak mem 96MB, user 1.8s, sys 21.5s, output queue size 20
progress 80% @chr17:82000001, elapsed 0.8s, est remaining 0.2s, peak mem 96MB, user 1.8s, sys 23.2s, output queue size 18
progress 85% @chr20:50000001, elapsed 0.9s, est remaining 0.2s, peak mem 96MB, user 1.9s, sys 24.8s, output queue size 15
progress 90% @chrX:33000001, elapsed 0.9s, est remaining 0.1s, peak mem 111MB, user 2.4s, sys 25.8s, output queue size 114
progress 95% @chrY:28000001, elapsed 1.0s, est remaining 0.1s, peak mem 123MB, user 2.8s, sys 26.7s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.3s, est remaining 0.0s, peak mem 135MB, user 3.7s, sys 28.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047062
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.300 user 14.978 sys 15.954 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.002 sys 1.339 real
idle: 87 calls 0.009 user 0.009 sys 39.104 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 141713408 mem 3.899 user 29.414 sys 2.472 real