.command.sh - Workdir - DAQ:BCL_TO_FASTQ:BCLCONVERT (REGRESSION;L003)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/efdb05a07a2acd7271f082e2845d83/.command.sh
Size: 330 bytes
Task: DAQ:BCL_TO_FASTQ:BCLCONVERT (REGRESSION;L003)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bcl-convert \
     \
    --tiles s_3 \
    --output-directory output \
    --bcl-input-directory rundir \
    --sample-sheet rundir/SampleSheet.csv

cat <<-END_VERSIONS > versions.yml
"DAQ:BCL_TO_FASTQ:BCLCONVERT":
    bclconvert: $(bcl-convert -V 2>&1 | head -n 1 | sed 's/^.*Version //')
END_VERSIONS