.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr16_25246607-25247490.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/601eba435d6b2dc018de4c17790d8e/.command.err
Size: 53.7 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr16_25246607-25247490.bed)
Attempt
Content

[2026-06-04T16:54:09.770225Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:09.771871Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:09.771885Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:09.771890Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:09.771894Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXNy6pmx'
[2026-06-04T16:54:09.771899Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:09.771904Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:09.771908Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:09.771912Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:09.771916Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:09.771920Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:09.771924Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:09.771927Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:09.771931Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:09.772485Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:09.772602Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:09.778492Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:09.779734Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:09.779983Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:09.780577Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:09.781029Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782047Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782445Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782799Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782991Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.783290Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.783389Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.783903Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.784738Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.787167Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.787600Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:09.788122Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788534Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788661Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788783Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788852Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788969Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789037Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789159Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789225Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.789440Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790277Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790678Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.790905Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791031Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791100Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791233Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791302Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791430Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791502Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791628Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791717Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.791840Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792057Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792538Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792611Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792739Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792807Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792930Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.792991Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793108Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793169Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793287Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793355Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793460Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.793568Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.794079Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.794674Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.794830Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.794898Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795030Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795096Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795207Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795271Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795381Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.795444Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.809744Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.809876Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.809958Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810134Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810214Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810310Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810383Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810498Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810576Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.810635Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:09.880573Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.881493Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.882209Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.882721Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.883789Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.884646Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.885716Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.889125Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.890675Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.894067Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:09.900425Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:09.906459Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:09.925502Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:09.928640Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:09.929408Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:09.929589Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:09.930622Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:10.115293Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.115406Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.116177Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.116992Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.122647Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:11.539065Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.540029Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.544554Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:11.605449Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.606357Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.610923Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:12.061846Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:12.073158Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.073899Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.077870Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:12.339723Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.339826Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.340600Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.340960Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.346866Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:12.807648Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.808701Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.812171Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:12.873587Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.874889Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.878958Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:12.939796Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.940894Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.945246Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:13.006937Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.007771Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.012348Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:13.123770Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.124814Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.128463Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:13.189607Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.189704Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.190442Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.190838Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.195281Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:13.196622Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:13.306093Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.306969Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.311521Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:13.372436Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.373195Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.377949Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:13.538882Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.539706Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.543955Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:14.238121Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:14.256943Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.257065Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.257700Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.258157Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.261807Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:14.263114Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:14.323007Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.323132Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.323837Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.324219Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.329005Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:14.330124Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:14.440762Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441535Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.447069Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:14.556812Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.556919Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.557528Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.557922Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.561870Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:14.563068Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:14.623104Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.623778Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.627521Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:14.738983Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.739110Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.739750Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.740351Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.745522Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:14.746685Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:14.808110Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.808262Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.808905Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.809239Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.813275Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:14.814686Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:14.874885Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.875599Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.879342Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:14.940758Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.940915Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.941564Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.941997Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.946932Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:14.947483Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:15.207695Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.208385Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.212276Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:15.241514Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.242347Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.246359Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:15.259090Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.259704Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.263860Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:15.292398Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.293073Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.297622Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:15.302376Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.303025Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.307134Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:15.368103Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.368257Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.368879Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.369424Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.374656Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:15.376902Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:15.435273Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.435822Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.440327Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:15.501205Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.167468Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.168058Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.171787Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:16.232983Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.548173Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.548780Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.552741Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:16.557753Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.558299Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.562005Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:16.590896Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.594547Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.626498Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.627038Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.630842Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:16.691902Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.724156Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.724834Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.728812Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:16.789834Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.857151Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.857611Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.861197Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:17.922482Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.437873Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.438400Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.442668Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:18.503285Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.503623Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.503826Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.504189Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.504882Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.509777Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:18.513153Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:18.514360Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:18.570055Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.570166Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.570195Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.570490Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.571143Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.575564Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:18.576704Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:18.636963Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.637075Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.637357Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.641097Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:18.702045Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.370532Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:28.660633Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:28.660633Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] 
[2026-06-04T16:54:28.660633Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:28.660704Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] 
[2026-06-04T16:54:28.660711Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:28.660719Z] [nf-e3601eba435d6b2dc018de4c17790d8e-99c23-n9sl4] [684_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec