cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.0s, est remaining 0.8s, peak mem 87MB, user 0.0s, sys 0.2s, output queue size 2425
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 0.8s, peak mem 96MB, user 0.0s, sys 0.3s, output queue size 3073
progress 15% @chr1:65408641, elapsed 0.1s, est remaining 0.8s, peak mem 103MB, user 0.1s, sys 0.5s, output queue size 5796
progress 20% @chr1:113814905, elapsed 0.2s, est remaining 0.7s, peak mem 114MB, user 0.1s, sys 0.7s, output queue size 8556
progress 25% @chr1:155247782, elapsed 0.2s, est remaining 0.7s, peak mem 124MB, user 0.2s, sys 0.9s, output queue size 10899
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.6s, peak mem 133MB, user 0.2s, sys 1.0s, output queue size 13376
progress 35% @chr1:209795290, elapsed 0.3s, est remaining 0.6s, peak mem 142MB, user 0.2s, sys 1.1s, output queue size 15802
progress 40% @chr1:246907551, elapsed 0.4s, est remaining 0.5s, peak mem 151MB, user 0.3s, sys 1.3s, output queue size 18209
progress 45% @chr2:32549313, elapsed 0.4s, est remaining 0.5s, peak mem 160MB, user 0.3s, sys 1.5s, output queue size 20496
progress 50% @chr2:74459643, elapsed 0.4s, est remaining 0.4s, peak mem 172MB, user 0.3s, sys 1.6s, output queue size 22988
progress 55% @chr2:117814778, elapsed 0.5s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 1.8s, output queue size 25585
progress 60% @chr2:169487069, elapsed 0.7s, est remaining 0.4s, peak mem 192MB, user 0.4s, sys 1.9s, output queue size 28213
progress 65% @chr2:202788830, elapsed 0.8s, est remaining 0.4s, peak mem 196MB, user 0.4s, sys 2.1s, output queue size 30485
progress 70% @chr2:233807423, elapsed 0.9s, est remaining 0.4s, peak mem 205MB, user 0.5s, sys 2.2s, output queue size 1331
progress 75% @chr3:25626772, elapsed 0.9s, est remaining 0.3s, peak mem 208MB, user 0.5s, sys 2.4s, output queue size 3539
progress 80% @chr3:49808020, elapsed 1.0s, est remaining 0.3s, peak mem 217MB, user 0.5s, sys 2.5s, output queue size 6012
progress 85% @chr3:101857292, elapsed 1.1s, est remaining 0.2s, peak mem 229MB, user 0.5s, sys 2.6s, output queue size 8653
progress 90% @chr3:139582927, elapsed 1.2s, est remaining 0.1s, peak mem 238MB, user 0.6s, sys 2.8s, output queue size 11246
progress 95% @chr3:187741772, elapsed 1.2s, est remaining 0.1s, peak mem 249MB, user 0.6s, sys 3.0s, output queue size 13650
progress 100% @chr4:25863456, elapsed 1.3s, est remaining 0.0s, peak mem 259MB, user 0.6s, sys 3.1s, output queue size 15889
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692765
output file size: 22305
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.001 user 0.012 sys 0.017 real
advance: 51084 calls 0.010 user 0.003 sys 0.024 real
calc: 100735 calls 0.009 user 0.005 sys 0.017 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.001 sys 2.393 real
fetch: 100735 calls 0.000 user 0.006 sys 0.018 real
fetch_ref: 100735 calls 0.031 user 0.052 sys 0.381 real
idle: 51 calls 0.004 user 0.003 sys 25.525 real
init: 1 calls 0.040 user 0.000 sys 0.044 real
region: 100735 calls 0.000 user 0.001 sys 0.019 real
tracker: 100735 calls 0.023 user 0.000 sys 0.093 real
overall: 272338944 mem 1.038 user 4.918 sys 3.515 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory