Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8ee81d6b6b4fcd312c228fa48d406e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/ca69078f6e6991116ef8a9af5b7c34/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/ca69078f6e6991116ef8a9af5b7c34/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wowsi3w_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:12,805 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:13,660 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:13,829 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:14,725 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:14,897 - cnv_pipe.batch.run_model - INFO - Processing cluster 793 with 159 probes
2026-06-04 16:59:15,269 - cnv_pipe.batch.run_model.cluster793 - INFO - Child process started for cluster 793 with 159 probes
2026-06-04 17:00:05,435 - cnv_pipe.batch.run_model.cluster793 - INFO - Child process finished cluster 793. Wrote cluster_793_samples.csv and cluster_793_params.csv
2026-06-04 17:00:05,436 - cnv_pipe.batch.run_model - INFO - Cluster 793 finished in 50.54 seconds. Status: SUCCESS