File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/40a6a0efb3bd199195761e433e350f/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-04T16:54:08.753213Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:08.756623Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:08.756660Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:08.756673Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:08.756688Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPGlqjy'
[2026-06-04T16:54:08.756696Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:08.756703Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:08.756711Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:08.756716Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:08.756725Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:08.756732Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:08.756741Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:08.756747Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:08.756757Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:08.757407Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:08.757547Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:08.764101Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:08.765125Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:08.765367Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:08.765573Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:08.765916Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766660Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766760Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766834Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.766980Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.767421Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.767565Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.767889Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.768457Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.769036Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.769255Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.771686Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:08.772051Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772216Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772342Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772409Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772527Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772593Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772717Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772785Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.772974Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773043Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773157Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773337Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773786Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773851Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.773988Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774054Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774177Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774289Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774425Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774503Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774647Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.774732Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775049Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775366Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775480Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775546Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775664Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775726Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775841Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.775901Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776012Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776080Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776206Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776272Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776494Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.776889Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777064Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777129Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777243Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777309Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777419Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777481Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777588Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777652Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777767Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.777832Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778109Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778584Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778706Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778771Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778883Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.778949Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779057Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779126Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779248Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779311Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779423Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779489Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779599Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779661Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779769Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.779852Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.799599Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.799744Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.799831Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.800029Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.800157Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.800452Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.800617Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.801651Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.802590Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:08.802698Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:08.835389Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.836509Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.836909Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.837530Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.838322Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.839176Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.840226Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.840843Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.842148Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.847145Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:08.851128Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:08.855260Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:08.861787Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:08.862635Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:08.866557Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:08.867080Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:09.011048Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.012443Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.017278Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:09.729707Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.730970Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.734917Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:10.285503Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:10.296916Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.297011Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.297924Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.298288Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.302743Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:10.303952Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:10.365396Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.366359Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.370541Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:10.431667Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.433266Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.437585Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:10.466252Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.467476Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.471848Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:10.484054Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.485493Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.489249Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:10.550312Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.551571Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.556716Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:10.767386Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.768690Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.773135Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:10.884429Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.885599Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.889868Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:11.201738Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.202955Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.207237Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:11.869871Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.870728Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.874613Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:12.487384Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.488343Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.492220Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:12.553397Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.554466Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.558405Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:12.571385Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.572272Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.576004Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:12.604724Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.605621Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.609524Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:12.622576Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.623393Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.627882Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:12.688976Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.689072Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.690032Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.690433Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.694627Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:12.695638Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:12.755647Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.755750Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.756586Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.757008Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.761043Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:12.762337Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:12.791017Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.791909Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.795899Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:12.800289Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.800960Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.805115Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:12.833794Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.834682Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.838615Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:13.150506Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.151400Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.155441Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:13.216479Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.217277Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.221198Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:13.584622Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.585503Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.590228Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:13.650918Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.651938Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.656077Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:13.767139Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.768110Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.772273Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:13.833111Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.834425Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.838721Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:13.999824Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.000827Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.005095Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:14.166219Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.167277Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.175869Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:14.385992Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.386948Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.391555Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:14.452424Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.453169Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458295Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:14.568275Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.569127Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.572905Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:14.634384Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.635110Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.638630Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:14.699976Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.700068Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.700865Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.701314Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.705211Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:14.706415Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:14.766145Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.766967Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.770823Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:14.783840Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.784629Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.788631Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:14.849737Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.849841Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.850481Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.850838Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.855436Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:14.856281Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:14.915962Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.916713Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.921541Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:14.982099Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.982873Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.986869Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:15.047936Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.048715Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.053228Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:15.114086Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.115328Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.119023Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:15.230414Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.231135Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.234979Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:15.296168Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.297238Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.300928Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:15.362140Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.362846Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.366980Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:15.628572Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.629246Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.632957Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:15.694190Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.694987Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.698701Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:15.760071Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.760766Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.764209Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:15.825632Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.826275Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.830194Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:15.891447Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.892130Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.896094Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:15.956902Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.957016Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.957576Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.958270Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.961946Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:15.994659Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:16.023390Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.023516Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.024082Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.024662Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.028260Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:16.029455Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:16.089653Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.089771Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.153940Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.154582Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.157556Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:16.219166Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.333931Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.334705Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.338400Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:16.399660Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.514443Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.514944Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.518756Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:16.579988Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.145795Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.146348Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.149928Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:17.211051Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.425826Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.426380Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.430322Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:17.491349Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.555658Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.556239Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.560229Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:17.621494Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.621870Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.622090Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.622499Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.622824Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.628228Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:17.630047Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:17.631346Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:17.687748Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.687842Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.687867Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.688185Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.688589Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.692037Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:17.693128Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:17.754811Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.754913Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.755206Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.759252Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:17.820061Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.338257Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:27.645617Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:27.645617Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] 
[2026-06-04T16:54:27.645617Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:27.645702Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] 
[2026-06-04T16:54:27.645716Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:27.645723Z] [nf-8140a6a0efb3bd199195761e433e350f-71339-sfkjl] [620_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec