File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/b1ee5da2cd700e3c1e621c5ffad573/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/b1ee5da2cd700e3c1e621c5ffad573/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/b1ee5da2cd700e3c1e621c5ffad573/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV5vG2u/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV5vG2u/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV5vG2u/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T16:54:14.417635Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:14.418562Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:14.418576Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:14.418580Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:14.418585Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXV5vG2u'
[2026-06-04T16:54:14.418589Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:14.418595Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:14.418598Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:14.418602Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:14.418606Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:14.418610Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:14.418613Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:14.418617Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:14.418621Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:14.419229Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:14.419379Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:14.425637Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:14.426711Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:14.426958Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:14.427169Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:14.427432Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.427782Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.427872Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.427945Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428063Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428130Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428249Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428311Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428431Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.428532Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.429084Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.429277Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.429442Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.431833Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.432812Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.433549Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:14.433827Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434060Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434193Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434269Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434475Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434553Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434671Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434741Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434852Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.434917Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.435060Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.435382Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.435880Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.435961Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436087Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436158Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436314Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436377Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436490Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436565Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436688Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.436758Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437065Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437468Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437590Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437668Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437793Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.437861Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.438530Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.438888Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439301Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439370Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439554Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439622Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439733Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439799Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439913Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.439975Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.440102Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.440166Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.440391Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441082Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441289Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441378Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441595Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441676Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441813Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.441884Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.442307Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.442848Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.457757Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.457880Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.457954Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458120Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458195Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458284Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458356Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.458487Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.459998Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.460313Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:14.464243Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.464884Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.465155Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.467729Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.468121Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:14.468608Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.469199Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.469990Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.471105Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.471956Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.482393Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:14.485009Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:14.485925Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:14.494041Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:14.495292Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:14.497047Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:14.498514Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:14.639672Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640664Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.648158Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:15.761357Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.762493Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.766002Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:16.128109Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.129295Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.132822Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:16.244037Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.244141Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.245289Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.245753Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.249566Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:16.250707Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:16.310465Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.310560Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.311757Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.312534Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.316974Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:16.318505Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:16.377296Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.378419Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.382166Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:16.593446Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.593546Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.594327Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.595071Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.598920Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:16.600352Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:16.661775Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.662653Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.666736Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:16.727874Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.727984Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.728914Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.729409Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.733788Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:16.734770Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:16.794089Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.794946Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.798353Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:16.859531Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.860378Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.863952Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:16.924832Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.925734Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.929186Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:16.990394Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.991271Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.995260Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:17.256828Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.257619Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.261638Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:17.522988Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.524027Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.527788Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:17.689212Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.690061Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.693756Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:18.005480Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.006288Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.009903Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:18.070906Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.071784Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.075176Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:18.080136Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.081026Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.084881Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:18.113555Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.114395Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.118982Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:18.123429Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.124296Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.127660Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:18.188647Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.189428Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.193218Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:18.454529Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.455281Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.459912Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:18.520110Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.520914Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.524738Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:18.636266Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.637291Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.641449Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:18.669663Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.670457Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.673935Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:18.734897Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.735643Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.739367Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:18.900893Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.901821Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.905034Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:19.116962Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.117711Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.121504Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:19.182484Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.183224Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.186407Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:19.215631Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.216486Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.220693Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:19.221076Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.221730Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.224868Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:19.286201Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.287068Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.290530Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:19.351703Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.352385Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.355682Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:19.416847Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.417550Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.421268Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:19.483101Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.483820Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.488859Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:19.516868Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.517703Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.521000Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:19.533979Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.534818Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.538419Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:19.567275Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.567926Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.572100Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:19.600302Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.600939Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.604929Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:19.605359Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.605930Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.609572Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:19.670343Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.670975Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.674448Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:19.735614Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.736371Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.739544Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:19.800768Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.801549Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.805517Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:20.167155Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.167772Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.171115Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:20.232794Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233429Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.237721Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:20.298230Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.412654Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.413366Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.416882Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:20.429919Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.430567Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.434682Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:20.463096Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.479064Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.344965Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.345053Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.345674Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.346063Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.350463Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:21.353636Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:21.411307Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.411394Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.475529Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.476149Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.479503Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:21.540422Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.658198Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.658725Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.661894Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:22.723098Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.088294Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.088787Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.092601Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:23.153203Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.153516Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.153686Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.154434Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.154972Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.159480Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:23.160752Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:23.162459Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:23.188185Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.188263Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.188507Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.188851Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.191081Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.192760Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:23.194664Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:23.224203Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.224284Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.224493Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.227893Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:23.288879Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.007310Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:33.307308Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:33.307308Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] 
[2026-06-04T16:54:33.307308Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:33.307390Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] 
[2026-06-04T16:54:33.307400Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:33.307407Z] [nf-91b1ee5da2cd700e3c1e621c5ffad573-56b2f-r2qkz] [691_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec