Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/b6895f84943c329b589c6f515ab20e/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/b6895f84943c329b589c6f515ab20e/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/79e1a575dd28bf75312b771e1b4f70/negative_somatic_control_1.tnseq.filtered.vcf.gz ==> STAGING COMPLETE (4 inputs) Lines total/split/joined/realigned/mismatch_removed/dup_removed/skipped: 136/16/0/35/0/0/0