Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/15503094df37299e4eac9d28d4d2f2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/d412b478254a8ff9fd9da7b4e3428c/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/15503094df37299e4eac9d28d4d2f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/36ea9ad3a59dc4769086629d8cc0aa/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/d412b478254a8ff9fd9da7b4e3428c/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/36ea9ad3a59dc4769086629d8cc0aa/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.llmtDg
Merging 1 temporary files
Done
Cleaning