File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/99dd546e4618e66b011ae2232f77bc/.command.log
Size
64.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/99dd546e4618e66b011ae2232f77bc/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/99dd546e4618e66b011ae2232f77bc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/381faa0df790cd8579fab559ff3f2b/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T16:54:13.060119Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:13.071152Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:13.071180Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:13.071186Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:13.071191Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPPpXo1'
[2026-06-04T16:54:13.071195Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:13.071200Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:13.071204Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:13.071207Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:13.071211Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:13.071215Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:13.071218Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:13.071222Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:13.071226Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:13.072151Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:13.072317Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:13.078687Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:13.079556Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:13.079864Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:13.080414Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:13.080766Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081063Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081154Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081224Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081340Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081405Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081523Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081587Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081707Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.081768Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082384Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082454Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082740Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.082878Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.083109Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.083664Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.084176Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.085960Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.087267Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.087802Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:13.087969Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088065Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088204Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088278Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088397Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088462Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088581Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088647Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.088834Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089006Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089429Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089502Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089619Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089684Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089805Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089873Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089986Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090051Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090160Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090221Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090334Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090420Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.090729Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091185Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091630Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091693Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091817Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.091935Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092052Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092118Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092325Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.092678Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093079Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093143Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093266Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093334Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093458Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093525Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093635Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093701Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093813Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.093873Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094014Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094142Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094430Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094933Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095045Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.095107Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110264Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110589Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110667Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110831Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110901Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.110988Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.112373Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.112813Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.113357Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.113416Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:13.118649Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.119197Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.119796Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.120425Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.122570Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.122944Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:13.123512Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.124663Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.125985Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.127175Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.130414Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:13.135171Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:13.139850Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:13.140970Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:13.145625Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:13.148261Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:13.149205Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:13.247904Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.248884Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.254255Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:14.117059Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.118092Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.123751Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:14.150954Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.151780Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.155565Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:14.518099Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.518988Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.523521Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:14.935075Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.935924Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.940392Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:15.000876Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.001763Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.006411Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:15.011413Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.012228Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.015352Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:15.076984Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.077810Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.081388Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:15.744202Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.745062Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.749164Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:15.809985Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.810074Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.810859Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.811216Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.814571Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:15.815901Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:15.875975Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.876874Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.880817Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:15.893401Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.894206Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.897239Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:15.958642Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.959505Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.963683Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:16.275213Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.276251Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.280008Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:16.341211Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.342080Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.345250Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:16.406737Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.407599Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.411429Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:16.411690Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.412311Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.415257Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:16.420310Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.420974Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.424443Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:16.452983Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.453975Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.457091Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:16.457788Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.458496Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.461416Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:16.490584Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.491403Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.494512Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:16.523519Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.524289Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.528058Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:16.528468Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.529143Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.532119Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:17.546483Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.547228Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.550990Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:17.612104Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.612235Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.612944Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.613345Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.617431Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:17.618491Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:17.678689Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.678801Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.679459Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.680058Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.683078Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:17.686849Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:17.746959Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.747688Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.751631Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:17.912899Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.913012Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.913682Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.914082Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.918616Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:17.919172Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:17.978837Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.979556Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.983436Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:18.044278Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.044993Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.048164Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:18.109504Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.110143Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.113831Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:18.174827Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.175518Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.179010Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:18.240120Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.240997Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.244825Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:18.274446Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.275154Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.278463Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:18.307447Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.308101Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.311615Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:18.316237Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.316883Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.321486Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:18.349595Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.350232Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.353361Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:18.414747Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.415411Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.419309Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:18.479985Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.480675Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.483896Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:18.512929Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.513576Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.517062Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:18.545922Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.546608Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.550087Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:18.550689Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.551204Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.554432Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:18.665946Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.666693Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.670338Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:18.731502Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.732080Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.735704Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:18.796461Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.797110Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.800522Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:18.861479Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.862108Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.865364Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:18.926828Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.927632Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.931090Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:18.992361Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.992982Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.996996Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:19.057423Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.171763Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.172339Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.175732Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:19.237007Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.502061Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.502637Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.505793Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:19.566921Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.132595Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.133088Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.136991Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:20.198174Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.312515Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.313028Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.316210Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:20.377859Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.592439Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.592931Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.596255Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:20.657258Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.657342Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.657761Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.660870Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:20.689870Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.054819Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.055322Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.058851Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:21.119633Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.119918Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.120085Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.120486Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.121249Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.126103Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:21.127547Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:21.128949Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:21.154965Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.155044Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.155264Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.155628Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.159391Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:21.159677Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.160756Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:21.191365Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.191446Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.191641Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.195017Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:21.223719Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.643925Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:31.960033Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:31.960033Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] 
[2026-06-04T16:54:31.960033Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:31.960099Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] 
[2026-06-04T16:54:31.960107Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:31.960114Z] [nf-d499dd546e4618e66b011ae2232f77bc-322b7-fld85] [602_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec