[2026-06-04T16:54:20.218070Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:20.218877Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:20.218896Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:20.218901Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:20.218905Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXM7Fcho'
[2026-06-04T16:54:20.218909Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:20.218914Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:20.218917Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:20.218921Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T16:54:20.218924Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:20.218928Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:20.218931Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:20.218935Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:20.218938Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:20.219634Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:20.219722Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:20.225689Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:20.226362Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:20.226689Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:20.227284Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:20.227431Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.228353Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.228553Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.229048Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.229156Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.229321Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.230935Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231171Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:20.231443Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231533Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231662Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231738Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231871Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231937Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232059Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232129Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232246Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232320Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232681Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232749Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232928Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.232994Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233107Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233172Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233282Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233341Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233459Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233520Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233634Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.233778Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234449Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234574Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234710Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234778Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234894Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.234958Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.235079Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.235223Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.235808Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.235914Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236049Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236122Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236242Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236310Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236422Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236487Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236626Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236930Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.237779Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.237888Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238021Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238090Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238206Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238269Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238382Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238446Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.238745Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239206Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239329Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239395Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239505Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239566Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239678Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239743Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239851Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.239918Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.240028Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.240094Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.240224Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.240352Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.241344Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.241658Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.241784Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.241852Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.254872Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.254976Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255055Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255212Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255282Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255371Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255433Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255547Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255614Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.255658Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:20.262600Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.263221Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.263885Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.266091Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.266601Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:20.266882Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.267500Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.267979Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.270118Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:20.270829Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.271602Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.277057Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:20.278613Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:20.283255Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:20.286574Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:20.286918Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:20.287555Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:20.387714Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.387815Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.388695Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.389455Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.396060Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:21.309739Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.310841Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.314325Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:21.776845Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.777894Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.781272Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:21.842723Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.844072Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.847360Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:22.008652Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.010258Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.013676Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:22.425430Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.426543Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.430627Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:22.491342Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.491518Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.492511Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.493278Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.497849Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:22.498939Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:22.560558Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.561656Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.564962Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:22.676691Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.677762Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.681477Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:22.894016Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:22.942846Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.942966Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.943808Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.944572Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.948267Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:22.949601Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:23.010818Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.011736Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.015645Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:23.527923Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.528798Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.531994Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:23.643698Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.644569Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.647845Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:23.710252Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.711116Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.715082Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:24.027286Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.028145Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.031801Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:24.093138Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.094004Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.097687Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:24.159991Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.160869Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.164360Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:24.225538Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.226422Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.230138Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:24.290941Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.291879Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.295617Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:24.357046Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.357907Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.360988Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:24.472366Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.473194Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.476282Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:24.538104Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.538944Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.542884Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:24.754072Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.754833Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.758224Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:24.819383Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.820194Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.823172Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:24.852350Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.853047Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.856493Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:25.068125Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.068938Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.072275Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:25.133503Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.134293Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.138461Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:25.851022Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.851811Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.854641Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:25.884014Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.884652Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.887474Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:26.050547Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.051277Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.055208Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:26.115831Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.116531Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.120049Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:26.331297Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.332419Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.336074Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:26.396663Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.397675Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.400974Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:26.401699Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.402738Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.405708Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:26.466980Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.467998Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.471216Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:26.532178Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.533401Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.533756Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.535605Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.536112Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.539355Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.539548Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:26.542641Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:26.543729Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:26.603798Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.603888Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.603926Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.605047Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.605488Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.605784Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.609749Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:26.611512Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:26.613024Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:26.670682Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.670774Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.671624Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.672291Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.675458Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:26.676973Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:26.736687Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.736780Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.737378Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.737955Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.741505Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:26.742582Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:26.803878Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.804556Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.807989Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:26.969581Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.970298Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.973592Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:27.034824Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.035479Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.038935Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:27.100037Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.100650Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.103594Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:27.165146Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.165786Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.169080Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:27.229969Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.230607Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.233637Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:27.294861Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.295477Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.298460Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:27.304656Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.305148Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.308073Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:27.338435Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.338988Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.342551Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:27.347535Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.348064Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.350621Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:27.412335Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.412437Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.412947Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.415798Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:27.477431Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.641908Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.642428Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.645535Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:27.675785Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.676323Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.679341Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:27.680208Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.712277Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.744398Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.744885Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.747731Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:27.809252Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.224738Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.225259Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.228258Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:28.289533Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.554054Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.554547Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.557161Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:28.586610Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.951243Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.951795Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.954377Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:28.983889Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.984125Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.984237Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.984540Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.984915Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.988030Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:28.989648Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:28.990631Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:29.018207Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.018280Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.018304Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.018532Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.019114Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.022015Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:29.022959Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:29.052451Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.052506Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.052688Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.054913Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:29.084787Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.801510Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:39.107166Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:39.107166Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner]
[2026-06-04T16:54:39.107166Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T16:54:39.107215Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner]
[2026-06-04T16:54:39.107227Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:39.107234Z] [nf-f31188cffcc9b8c7e44f5e1f3670d784-e6daa-nhrt6] [596_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec