[2026-06-04T16:54:20.096157Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:20.097238Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:20.097258Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:20.097264Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:20.097269Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQkBYmn'
[2026-06-04T16:54:20.097273Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:20.097278Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:20.097282Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:20.097286Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T16:54:20.097290Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:20.097293Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:20.097297Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:20.097301Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:20.097305Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:20.097778Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:20.097901Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:20.104681Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:20.105439Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:20.105832Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:20.105998Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:20.106172Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.106932Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.107089Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.107185Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.107265Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.107440Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.107679Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.108182Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.108294Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.108495Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.108599Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.109769Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.110255Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.110644Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:20.110776Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.110850Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.110975Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111041Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111152Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111234Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111452Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111584Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.111891Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.112151Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.112424Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.112652Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113048Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113120Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113252Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113321Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113438Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113511Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113619Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113701Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113813Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.113876Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114003Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114073Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114251Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114636Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114776Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114836Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.114974Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115041Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115147Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115224Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115338Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115454Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.115592Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.116085Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.116678Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.116761Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.116886Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.116954Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117072Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117137Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117252Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117316Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117425Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117488Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.117707Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118260Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118393Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118463Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118580Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118649Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118760Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.118820Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.119412Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.120081Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.120199Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.120264Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.120376Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.120439Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.121996Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.122627Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.122756Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.122826Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.122947Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123014Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123134Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123199Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123315Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123377Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123489Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123560Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123716Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.123854Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.124034Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.124705Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.125301Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.125740Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126463Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126528Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126640Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126700Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126812Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.126870Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.141516Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.142223Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.142377Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.142424Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.143446Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.143589Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.143673Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.144003Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.144176Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.144263Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.144614Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.144881Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.145222Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.145268Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.145444Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:20.145994Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.146851Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.147927Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.149139Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.153468Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T16:54:20.156195Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:20.158749Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T16:54:20.160979Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:20.163867Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T16:54:20.166246Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T16:54:20.166837Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:20.169389Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:20.230488Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231586Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.235421Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:20.235832Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.236679Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.240198Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T16:54:20.240418Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.241273Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.244341Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T16:54:20.656679Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.657854Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.662016Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T16:54:21.525190Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.526275Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.530115Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T16:54:21.590889Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.592252Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.596194Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T16:54:21.757254Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.757352Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.758401Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.759156Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.762697Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:21.763809Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T16:54:21.825129Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.826178Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.829790Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T16:54:21.834672Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.835642Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.839153Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T16:54:21.839837Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.840776Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.844105Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T16:54:21.905554Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.906686Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.910417Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T16:54:22.021821Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.022944Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.026923Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T16:54:22.940175Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.941715Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.945106Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:23.256685Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.258209Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.261979Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T16:54:23.290831Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.292346Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.295551Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T16:54:23.296372Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.297867Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.301251Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:23.330127Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.331559Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.335322Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:23.364151Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.365738Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.368900Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T16:54:23.397975Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.399379Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.402573Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T16:54:23.403328Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.404635Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.407418Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T16:54:23.436784Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.438207Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.442059Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T16:54:23.470702Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.472405Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.475422Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:23.476585Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.477731Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.480407Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:23.509560Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.511214Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.514496Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T16:54:23.575563Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.577031Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.580812Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:23.641482Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.642909Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.646072Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T16:54:23.707225Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.708711Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.711908Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T16:54:23.773078Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.774926Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.778599Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:24.290635Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.291670Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.295822Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:24.357003Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.358107Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.361359Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T16:54:24.422407Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.423459Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.426661Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T16:54:24.487820Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.488849Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.492422Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T16:54:24.804103Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.805115Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.808295Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T16:54:24.870115Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.871144Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.873818Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T16:54:24.903149Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.904053Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.907547Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:24.907777Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.908505Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.912070Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:24.973008Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.974034Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.977462Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T16:54:25.038828Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.039785Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.043084Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T16:54:25.105373Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.106229Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.109549Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:25.221347Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.222393Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.226320Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T16:54:25.287232Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.288597Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.292258Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T16:54:25.403409Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.403498Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.405117Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.405349Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.409220Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T16:54:25.410807Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T16:54:25.470159Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.470272Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.472009Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.472445Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.476390Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T16:54:25.477569Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T16:54:25.537104Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.537210Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.538344Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.538687Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.542878Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T16:54:25.544006Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T16:54:25.603666Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.604919Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.608584Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:25.669418Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.670647Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.674077Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T16:54:25.735069Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.736682Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.739902Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T16:54:25.901143Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.902492Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.906162Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T16:54:26.117269Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.118464Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.122011Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:26.122602Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.123667Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.127094Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T16:54:26.139871Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.141455Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.144706Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:26.157554Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.158691Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.161849Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T16:54:26.162560Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.163494Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.166912Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:26.179542Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.180640Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.184289Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:26.245119Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.246292Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.249877Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T16:54:26.250734Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.251811Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.255544Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T16:54:26.316378Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.316493Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.317516Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.318028Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.322098Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T16:54:26.323415Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T16:54:26.433435Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.434552Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.437954Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T16:54:26.499173Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.500384Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.504037Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T16:54:26.564739Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.565806Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.569096Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T16:54:26.630085Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.631167Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.634783Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:26.695608Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.696642Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.699882Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T16:54:26.760907Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.762000Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.765359Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T16:54:27.327608Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.328597Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.332025Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T16:54:27.360919Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.362076Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.364985Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T16:54:27.426241Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.427201Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.430002Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.431049Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.431527Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:27.434571Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T16:54:27.495760Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.495865Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.496705Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.497118Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.500742Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T16:54:27.501984Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T16:54:27.513256Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.514139Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.517066Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T16:54:27.546167Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.547262Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.549267Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.550382Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T16:54:27.550530Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.554040Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T16:54:27.582608Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.582677Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.583468Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.583862Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.587198Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:27.588360Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:27.616629Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.617778Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.620627Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T16:54:28.433439Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.434150Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.437260Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T16:54:28.466396Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.467027Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.470616Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:28.470937Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.471468Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.474406Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T16:54:28.487521Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.488034Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.490915Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:28.504097Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.507826Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.523578Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.587972Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.588478Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.591293Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T16:54:28.621661Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.621739Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.622272Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.625125Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T16:54:28.654650Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.869004Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.869574Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.872705Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T16:54:28.933743Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.899439Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.899957Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.902826Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T16:54:29.932937Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.147578Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.148660Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.151042Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T16:54:35.180550Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.180821Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.180934Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.181496Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.181951Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.185347Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:35.186858Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:35.187980Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:35.215643Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.215708Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.215736Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.215949Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.216417Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.218819Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:35.219829Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:35.249470Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.249523Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.249677Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.251837Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:35.281653Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:39.103074Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:53.216131Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:53.216131Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner]
[2026-06-04T16:54:53.216131Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T16:54:53.216195Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner]
[2026-06-04T16:54:53.216202Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:53.216210Z] [nf-be5aac92d929ee27d0b8c55598a82e4f-2e106-bp69f] [601_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec