cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i Sig_18_Blood.bam -r Homo_sapiens_assembly38.fasta --algo LocusCollector --fun score_info Sig_18_Blood.md.score
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.1s, est remaining 1.7s, peak mem 75MB, user 0.1s, sys 2.0s, output queue size 2
progress 10% @chr2:71000001, elapsed 0.2s, est remaining 1.4s, peak mem 75MB, user 0.3s, sys 4.3s, output queue size 4
progress 15% @chr2:234000001, elapsed 0.2s, est remaining 1.3s, peak mem 75MB, user 0.4s, sys 6.4s, output queue size 3
progress 20% @chr3:151000001, elapsed 0.3s, est remaining 1.2s, peak mem 75MB, user 0.6s, sys 8.4s, output queue size 2
progress 25% @chr4:109000001, elapsed 0.4s, est remaining 1.1s, peak mem 75MB, user 0.7s, sys 10.5s, output queue size 6
progress 30% @chr5:85000001, elapsed 0.5s, est remaining 1.1s, peak mem 75MB, user 0.8s, sys 12.6s, output queue size 1
progress 35% @chr6:64000001, elapsed 0.5s, est remaining 1.0s, peak mem 75MB, user 1.0s, sys 14.7s, output queue size 2
progress 40% @chr7:51000001, elapsed 0.6s, est remaining 0.9s, peak mem 75MB, user 1.2s, sys 16.7s, output queue size 4
progress 45% @chr8:52000001, elapsed 0.7s, est remaining 0.8s, peak mem 75MB, user 1.3s, sys 18.7s, output queue size 5
progress 50% @chr9:72000001, elapsed 0.7s, est remaining 0.7s, peak mem 75MB, user 1.4s, sys 20.8s, output queue size 1
progress 55% @chr10:94000001, elapsed 0.8s, est remaining 0.7s, peak mem 75MB, user 1.6s, sys 22.9s, output queue size 1
progress 60% @chr11:121000001, elapsed 0.9s, est remaining 0.6s, peak mem 75MB, user 1.7s, sys 25.0s, output queue size 2
progress 65% @chr13:15000001, elapsed 1.0s, est remaining 0.5s, peak mem 75MB, user 1.8s, sys 27.1s, output queue size 1
progress 70% @chr14:60000001, elapsed 1.0s, est remaining 0.4s, peak mem 75MB, user 2.0s, sys 29.2s, output queue size 1
progress 75% @chr16:10000001, elapsed 1.1s, est remaining 0.4s, peak mem 75MB, user 2.2s, sys 31.8s, output queue size 6
progress 80% @chr17:80000001, elapsed 1.2s, est remaining 0.3s, peak mem 75MB, user 2.4s, sys 34.9s, output queue size 9
progress 85% @chr20:9000001, elapsed 1.3s, est remaining 0.2s, peak mem 75MB, user 2.6s, sys 37.9s, output queue size 13
progress 90% @chrX:25000001, elapsed 1.5s, est remaining 0.2s, peak mem 108MB, user 3.3s, sys 40.8s, output queue size 114
progress 95% @chrY:16000001, elapsed 1.7s, est remaining 0.1s, peak mem 126MB, user 3.6s, sys 44.7s, output queue size 276
progress 100% @chr21:41000001, elapsed 2.0s, est remaining 0.0s, peak mem 161MB, user 4.5s, sys 50.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: LocusCollector
license: sentieon:Dedup=31
input file size: 51298916
reads: 1001133
contig: 3367 intervals 3217346917 bases
LocusCollector::merge: 1 calls 0.026 user 0.018 sys 0.049 real
VcfLineRecordHelper::sort: 31 calls 0.000 user 0.000 sys 0.000 real
advance: 3219322 calls 1.519 user 11.375 sys 12.543 real
calc: 3219322 calls 0.417 user 7.965 sys 8.396 real
done: 1 calls 0.026 user 0.018 sys 0.049 real
execute: 1 calls 0.002 user 0.002 sys 2.012 real
fetch: 3219322 calls 0.342 user 8.108 sys 8.385 real
idle: 80 calls 0.010 user 0.030 sys 37.044 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 209920000 mem 4.630 user 51.595 sys 3.074 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -i Sig_18_Blood.bam -r Homo_sapiens_assembly38.fasta --algo Dedup --score_info Sig_18_Blood.md.score --metrics Sig_18_Blood.md.metrics Sig_18_Blood.md.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.1s, peak mem 168MB, user 0.3s, sys 2.7s, output queue size 18
progress 10% @chr2:43000001, elapsed 0.2s, est remaining 1.8s, peak mem 183MB, user 0.7s, sys 4.9s, output queue size 30
progress 15% @chr2:234000001, elapsed 0.3s, est remaining 1.6s, peak mem 201MB, user 1.0s, sys 7.2s, output queue size 3
progress 20% @chr3:152000001, elapsed 0.4s, est remaining 1.5s, peak mem 216MB, user 1.2s, sys 9.6s, output queue size 15
progress 25% @chr4:114000001, elapsed 0.4s, est remaining 1.3s, peak mem 228MB, user 1.4s, sys 11.9s, output queue size 1
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 240MB, user 1.6s, sys 14.3s, output queue size 6
progress 35% @chr6:65000001, elapsed 0.6s, est remaining 1.1s, peak mem 249MB, user 1.9s, sys 16.6s, output queue size 12
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.0s, peak mem 249MB, user 2.2s, sys 18.9s, output queue size 16
progress 45% @chr8:59000001, elapsed 0.8s, est remaining 1.0s, peak mem 252MB, user 2.4s, sys 21.3s, output queue size 20
progress 50% @chr9:70000001, elapsed 0.9s, est remaining 0.9s, peak mem 258MB, user 2.6s, sys 23.6s, output queue size 7
progress 55% @chr10:94000001, elapsed 0.9s, est remaining 0.8s, peak mem 258MB, user 2.8s, sys 26.0s, output queue size 6
progress 60% @chr11:122000001, elapsed 1.0s, est remaining 0.7s, peak mem 258MB, user 3.0s, sys 28.4s, output queue size 10
progress 65% @chr13:17000001, elapsed 1.1s, est remaining 0.6s, peak mem 261MB, user 3.2s, sys 30.8s, output queue size 19
progress 70% @chr14:63000001, elapsed 1.2s, est remaining 0.5s, peak mem 261MB, user 3.4s, sys 33.2s, output queue size 14
progress 75% @chr16:14000001, elapsed 1.3s, est remaining 0.4s, peak mem 267MB, user 3.6s, sys 35.5s, output queue size 14
progress 80% @chr18:26000001, elapsed 1.4s, est remaining 0.4s, peak mem 267MB, user 3.9s, sys 39.5s, output queue size 23
progress 85% @chr19:47000001, elapsed 1.6s, est remaining 0.3s, peak mem 267MB, user 4.2s, sys 45.4s, output queue size 34
progress 90% @chrX:30000001, elapsed 2.0s, est remaining 0.2s, peak mem 501MB, user 7.7s, sys 49.6s, output queue size 114
progress 95% @chrY:19000001, elapsed 2.2s, est remaining 0.1s, peak mem 510MB, user 11.0s, sys 55.0s, output queue size 240
progress 100% @chr21:41000001, elapsed 3.2s, est remaining 0.0s, peak mem 522MB, user 13.7s, sys 61.4s, output queue size 3664
library Sig_18_Blood:
chimeric_paired 1027
duped 115575
duped_chimeric_paired 2
duped_paired 115574
duped_unpaired 1
optical_dup 5956
paired 999968
reads 1001133
secondary_supplementary 1151
unmapped 7
unpaired 7
optical dup clusters 5759, maxdup 3, total optical dup pairs 5956
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: Dedup
license: sentieon:Dedup=31
input file size: 51298916
reads: 1001133
contig: 3367 intervals 3217346917 bases
MateInfoByVcf::buildInfoMap: 26026 calls 0.005 user 0.017 sys 0.053 real
MateInfoByVcf::load: 26026 calls 4.248 user 1.005 sys 4.285 real
MateInfoByVcf::parse_events: 26026 calls 4.192 user 0.924 sys 4.052 real
advance: 3219322 calls 1.151 user 7.573 sys 9.010 real
calc: 3219322 calls 4.743 user 21.828 sys 27.086 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.001 sys 3.277 real
fetch: 3219322 calls 0.333 user 7.454 sys 7.873 real
find_pairEnds: 26026 calls 0.172 user 0.014 sys 0.368 real
idle: 1047 calls 0.082 user 0.143 sys 54.431 real
init: 1 calls 0.010 user 0.000 sys 0.006 real
markDup: 26026 calls 0.842 user 0.167 sys 1.408 real
vcfadvance: 26026 calls 0.023 user 0.109 sys 0.064 real
write: 3219322 calls 2.713 user 7.255 sys 9.684 real
overall: 547512320 mem 14.348 user 62.624 sys 4.303 real