cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:158000001, elapsed 0.1s, est remaining 2.0s, peak mem 813MB, user 0.1s, sys 6.1s, output queue size 122
progress 10% @chr3:134000001, elapsed 0.2s, est remaining 1.8s, peak mem 813MB, user 0.2s, sys 17.3s, output queue size 283
progress 15% @chr1:177000001, elapsed 0.3s, est remaining 1.5s, peak mem 813MB, user 0.3s, sys 31.4s, output queue size 445
progress 20% @chr5:24000001, elapsed 0.3s, est remaining 1.3s, peak mem 813MB, user 0.5s, sys 45.6s, output queue size 607
progress 25% @chr6:12000001, elapsed 0.4s, est remaining 1.1s, peak mem 813MB, user 0.7s, sys 56.7s, output queue size 769
progress 30% @chr6:53000001, elapsed 0.4s, est remaining 1.0s, peak mem 813MB, user 0.9s, sys 72.0s, output queue size 930
progress 35% @chr7:23000001, elapsed 0.5s, est remaining 0.9s, peak mem 813MB, user 1.3s, sys 88.9s, output queue size 1091
progress 40% @chr9:5000001, elapsed 0.5s, est remaining 0.8s, peak mem 813MB, user 1.6s, sys 103.6s, output queue size 1253
progress 45% @chr9:88000001, elapsed 0.6s, est remaining 0.7s, peak mem 813MB, user 1.9s, sys 119.0s, output queue size 1414
progress 50% @chr11:57000001, elapsed 0.6s, est remaining 0.6s, peak mem 813MB, user 2.2s, sys 132.0s, output queue size 1576
progress 55% @chr12:73000001, elapsed 0.7s, est remaining 0.6s, peak mem 813MB, user 2.5s, sys 144.5s, output queue size 1737
progress 60% @chr8:120000001, elapsed 0.8s, est remaining 0.5s, peak mem 813MB, user 2.8s, sys 156.2s, output queue size 1900
progress 65% @chr15:77000001, elapsed 0.8s, est remaining 0.4s, peak mem 813MB, user 3.3s, sys 167.6s, output queue size 2061
progress 70% @chr16:46000001, elapsed 0.9s, est remaining 0.4s, peak mem 813MB, user 3.7s, sys 180.1s, output queue size 2223
progress 75% @chr17:29000001, elapsed 0.9s, est remaining 0.3s, peak mem 813MB, user 4.1s, sys 193.5s, output queue size 2384
progress 80% @chr9:132000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 4.6s, sys 206.3s, output queue size 2546
progress 85% @chrX:1, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 5.0s, sys 221.8s, output queue size 2709
progress 90% @chrY:8000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 5.4s, sys 239.3s, output queue size 3025
progress 95% @chr15_KI270850v1_alt:1, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 5.8s, sys 260.8s, output queue size 3221
progress 100% @HLA-DQA1*05:01:01:02:1, elapsed 1.3s, est remaining 0.0s, peak mem 813MB, user 6.2s, sys 311.6s, output queue size 6278
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.006 user 0.006 sys 0.042 real
"predict_filter": 171 calls 0.002 user 0.007 sys 0.054 real
advance: 3219322 calls 0.302 user 107.650 sys 117.392 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.008 sys 1.342 real
fetch_ref: 460 calls 0.008 user 0.121 sys 0.356 real
idle: 20633 calls 2.185 user 1.718 sys 1199.126 real
init: 1 calls 0.825 user 0.588 sys 1.923 real
overall: 852627456 mem 9.912 user 324.465 sys 4.637 real