Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8ee81d6b6b4fcd312c228fa48d406e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/7cbb3a2229435604b24a76b46ac3af/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/15c967f68b44e412c6e80b8ed0fad9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/15c967f68b44e412c6e80b8ed0fad9/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3jz7us8t because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:57,253 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:58,177 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:58,351 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:59,320 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:59,402 - cnv_pipe.batch.run_model - INFO - Processing cluster 1025 with 190 probes
2026-06-04 16:59:59,892 - cnv_pipe.batch.run_model.cluster1025 - INFO - Child process started for cluster 1025 with 190 probes
2026-06-04 17:00:59,535 - cnv_pipe.batch.run_model.cluster1025 - INFO - Child process finished cluster 1025. Wrote cluster_1025_samples.csv and cluster_1025_params.csv
2026-06-04 17:00:59,536 - cnv_pipe.batch.run_model - INFO - Cluster 1025 finished in 60.13 seconds. Status: SUCCESS