File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/b0df6dd81de48c55ef6afb9fafbb60/.command.err
Size
525 bytes
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (germline_control_2)
Attempt

Content

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INFO: Loading GT correction model: gt_correction_model_v2.joblib
INFO: GT correction threshold: 0.5
INFO: Reading VCF: germline_control_2.haplotyper_rf.rf_filtered.vcf.gz
INFO: Total variants: 394, PASS INDELs to evaluate: 18
INFO: Annotating PASS INDELs with Simple_repeat...
INFO:   Simple_repeat hits: 0
INFO: Predicting genotypes...
INFO: Writing output VCF: germline_control_2.haplotyper_rf.gt_corrected.vcf.gz
INFO: GT corrections applied:
INFO:   Het -> Hom: 0
INFO:   Hom -> Het: 0
INFO:   Unchanged:  18
INFO: Done!