[2026-06-04T16:54:09.718786Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:09.721679Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:09.721707Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:09.721713Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:09.721718Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdUGIDc'
[2026-06-04T16:54:09.721722Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:09.721730Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:09.721734Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:09.721738Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:09.721742Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:09.721746Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:09.721749Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:09.721753Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:09.721757Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:09.722316Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:09.722453Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:09.728901Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:09.729971Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:09.730180Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:09.730535Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:09.730935Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.731717Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.731821Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.731901Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.732255Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.732557Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.732636Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.733035Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.733766Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.736709Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.736852Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.737302Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.737783Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.738214Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:09.738478Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.738568Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.738701Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.738772Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.738949Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739276Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739689Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739761Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739877Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739948Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740077Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740168Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740303Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740372Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740499Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740592Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.740890Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.741707Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742217Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742335Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742499Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742598Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742765Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742857Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.743006Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.743134Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.743486Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744060Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744442Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744579Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744763Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744924Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.745302Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.745943Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746169Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746286Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746472Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746584Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746794Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.746959Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.747267Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.747972Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748219Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748333Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748511Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748593Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748735Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.748810Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.749210Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.749402Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.750311Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.750962Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751180Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751279Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751448Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751549Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751722Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.751823Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.752073Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.753815Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.776899Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.777199Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.778147Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.778310Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.778609Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.778900Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.779925Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.780179Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.780777Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.781470Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782302Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.782641Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.783136Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.783800Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.785141Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.785581Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.786246Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.787380Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.788595Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:09.793122Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:09.800782Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:09.801532Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:09.807584Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:09.810411Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:09.812433Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:09.816465Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:09.819369Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:10.986517Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.988416Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.993667Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:11.404975Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.406041Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.410540Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:11.873117Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.874404Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.878987Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:11.990266Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.990391Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.991614Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.992012Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.996075Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:12.030906Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:12.057311Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.057423Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.057453Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.058423Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.058817Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.059210Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.064226Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:12.068335Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:12.069995Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:12.126981Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.127094Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.127997Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.128430Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.132674Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:12.133764Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:12.193461Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.193573Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.194629Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.195182Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.200318Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:12.201162Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:12.762160Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.763244Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.767220Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:12.878540Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.879512Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.883565Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:12.944688Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.945571Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.949445Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:13.060720Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.061682Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.065794Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:13.126466Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.127418Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.131346Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:13.192247Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.192349Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.193201Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.193553Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.198000Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:13.199326Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:13.259511Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.260483Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.263961Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:13.375409Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.375554Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.376421Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.376786Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.380862Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:13.382271Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:13.409608Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.410422Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.414012Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:13.418676Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.419405Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.422915Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:13.484129Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.485378Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.489309Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:13.701166Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.702046Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.705640Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:13.767006Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.767804Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.771381Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:14.233467Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.234584Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.238705Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:14.650447Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.651425Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.655810Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:14.684534Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.685502Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.689983Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:14.702241Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.703157Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.707523Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:14.736115Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.737056Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.740864Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:14.769918Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.770902Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.774797Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:14.803643Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.804791Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.808502Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:14.871138Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.871927Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.876867Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:15.388678Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.389465Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.393672Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:15.454675Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.455401Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.458981Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:15.488069Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.488843Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.492759Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:15.497128Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.497198Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.497729Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.498109Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.502305Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:15.502769Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:15.531015Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.531718Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.535318Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:15.539956Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.540045Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.540612Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.540931Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.546086Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:15.547450Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:15.574484Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.575393Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.578967Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:15.640298Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.640420Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.640448Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.641092Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.641491Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.641766Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.649470Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:15.650086Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:15.650765Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:15.707493Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.707614Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.708264Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.708972Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.713131Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:15.714025Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:15.717572Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.718117Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.721492Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:15.751023Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.751653Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.755242Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:15.760110Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.760726Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.765629Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:15.875686Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.876384Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.880161Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:15.941181Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.941879Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.946100Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:16.007437Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.008091Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.012093Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:16.625292Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.625964Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.629861Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:16.690964Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.691642Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.695810Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:16.756741Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.757404Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.761380Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:16.773933Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.774650Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.778422Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:16.807598Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.811321Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.975770Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.976380Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.980840Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:17.041776Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.049580Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.050042Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.053851Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:17.115126Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.931744Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.932310Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.936403Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:17.997385Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.212038Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.212603Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.216964Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:18.278207Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.492995Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.493606Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.497284Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:18.558663Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.024377Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.024892Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.028550Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:19.089753Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.090211Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.090386Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.090820Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.091508Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.096710Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:19.098192Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.099651Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.156442Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.156543Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.156572Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.156884Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.157332Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.161332Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.162471Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.190485Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.190652Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.190907Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.193762Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:19.255189Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.372106Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:28.610405Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:28.610405Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner]
[2026-06-04T16:54:28.610405Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T16:54:28.610486Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner]
[2026-06-04T16:54:28.610500Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:28.610509Z] [nf-b98a8571420b0810cf69ba4e1c8a81c5-d75d2-wnhjp] [689_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec