cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144248877, elapsed 0.1s, est remaining 1.0s, peak mem 84MB, user 0.1s, sys 0.1s, output queue size 1787
progress 10% @chr9:37009126, elapsed 0.1s, est remaining 0.9s, peak mem 90MB, user 0.1s, sys 0.3s, output queue size 4013
progress 15% @chr9:96651390, elapsed 0.1s, est remaining 0.8s, peak mem 94MB, user 0.1s, sys 0.5s, output queue size 5784
progress 20% @chr9:127467740, elapsed 0.2s, est remaining 0.7s, peak mem 105MB, user 0.1s, sys 0.7s, output queue size 8404
progress 25% @chr10:14922981, elapsed 0.2s, est remaining 0.7s, peak mem 111MB, user 0.2s, sys 0.8s, output queue size 11159
progress 30% @chr10:69198372, elapsed 0.3s, est remaining 0.7s, peak mem 121MB, user 0.2s, sys 0.9s, output queue size 13542
progress 35% @chr10:100507425, elapsed 0.3s, est remaining 0.6s, peak mem 130MB, user 0.2s, sys 1.1s, output queue size 945
progress 40% @chr11:299305, elapsed 0.4s, est remaining 0.6s, peak mem 138MB, user 0.3s, sys 1.3s, output queue size 3525
progress 45% @chr11:18007941, elapsed 0.4s, est remaining 0.5s, peak mem 144MB, user 0.3s, sys 1.4s, output queue size 5689
progress 50% @chr11:61419922, elapsed 0.5s, est remaining 0.5s, peak mem 154MB, user 0.3s, sys 1.5s, output queue size 8048
progress 55% @chr11:73308639, elapsed 0.5s, est remaining 0.4s, peak mem 166MB, user 0.3s, sys 1.8s, output queue size 10724
progress 60% @chr11:114522879, elapsed 0.6s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 2.0s, output queue size 13013
progress 65% @chr12:6457406, elapsed 0.6s, est remaining 0.3s, peak mem 183MB, user 0.4s, sys 2.2s, output queue size 15368
progress 70% @chr12:31980956, elapsed 0.7s, est remaining 0.3s, peak mem 187MB, user 0.5s, sys 2.4s, output queue size 17470
progress 75% @chr12:55971521, elapsed 0.7s, est remaining 0.2s, peak mem 195MB, user 0.5s, sys 2.5s, output queue size 19939
progress 80% @chr12:100084476, elapsed 0.8s, est remaining 0.2s, peak mem 204MB, user 0.6s, sys 2.7s, output queue size 22673
progress 85% @chr12:123772834, elapsed 0.8s, est remaining 0.1s, peak mem 216MB, user 0.6s, sys 3.0s, output queue size 25522
progress 90% @chr13:48411389, elapsed 0.9s, est remaining 0.1s, peak mem 225MB, user 0.6s, sys 3.2s, output queue size 27892
progress 95% @chr14:22633768, elapsed 0.9s, est remaining 0.0s, peak mem 231MB, user 0.7s, sys 3.4s, output queue size 30143
progress 100% @chr14:61721739, elapsed 1.0s, est remaining 0.0s, peak mem 238MB, user 0.8s, sys 3.7s, output queue size 32698
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586800
output file size: 22310
reads: 1001133
contig: 48642 intervals 9000010 bases
"assemble": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_addRead": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_buildGraph": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_computecigar": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_calcsize": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_clear": 3 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_prepare": 4 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_threading": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op1": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op2": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_create": 1 calls 0.000 user 0.000 sys 0.000 real
"checkGraph": 1 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 1 calls 0.000 user 0.000 sys 0.000 real
active: 98785 calls 0.010 user 0.000 sys 0.017 real
advance: 50143 calls 0.016 user 0.004 sys 0.022 real
assemble_region: 1 calls 0.000 user 0.000 sys 0.000 real
calc: 98785 calls 0.000 user 0.000 sys 0.017 real
clip_region: 1 calls 0.000 user 0.000 sys 0.000 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.002 sys 1.706 real
fetch: 98785 calls 0.000 user 0.006 sys 0.017 real
fetch_ref: 98786 calls 0.111 user 0.076 sys 0.384 real
fetch_region: 1 calls 0.000 user 0.000 sys 0.000 real
idle: 39 calls 0.002 user 0.013 sys 22.533 real
init: 1 calls 0.040 user 0.010 sys 0.156 real
region: 98785 calls 0.002 user 0.005 sys 0.020 real
tracker: 98785 calls 0.035 user 0.038 sys 0.095 real
trim_region: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 250351616 mem 1.340 user 5.408 sys 2.943 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory