File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/6b6590bf100411cda311d1f698f990/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-04T16:54:13.722512Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:13.723741Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:13.723752Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:13.723757Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:13.723760Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6HKPrr'
[2026-06-04T16:54:13.723764Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:13.723769Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:13.723773Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:13.723777Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:13.723780Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:13.723784Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:13.723788Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:13.723791Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:13.723795Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:13.724831Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:13.724944Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:13.730881Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:13.731783Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:13.732050Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:13.732304Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:13.732570Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.733248Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.733343Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.733414Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.733530Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.733595Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.734027Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.734166Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.734343Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.734779Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.735167Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.737563Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.737833Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738046Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738115Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738344Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:13.738464Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738556Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738674Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.738855Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739482Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739560Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739676Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739745Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739854Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.739917Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740041Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740103Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740211Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740286Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740435Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.740551Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741006Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741275Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741389Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741527Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741648Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741711Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741821Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741882Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.741996Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.742056Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.742165Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.742233Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.742736Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743052Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743173Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743238Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743404Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743524Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743631Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743698Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743805Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743867Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.743976Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.744037Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.744294Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.744804Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.744916Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.744981Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745095Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745158Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745291Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745362Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745472Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745542Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745652Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745715Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.745888Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.746092Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.746646Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.746717Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.746829Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.746894Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.764373Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.764857Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.764954Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.765134Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.765219Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.765316Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.765402Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.765800Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.766116Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.766203Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:13.766942Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:13.767107Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.767710Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.768764Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.769899Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.770993Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.773712Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.774163Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:13.774942Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.776191Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.780119Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:13.782539Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:13.787347Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:13.792511Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:13.795508Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:13.799367Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:13.799688Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:13.863665Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.863751Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.864483Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.864864Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.868422Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:13.873532Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:14.484578Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.485493Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.489591Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:15.151968Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.152078Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.152889Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.153555Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.157891Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:15.159584Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T16:54:15.189139Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.190190Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.194367Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T16:54:15.195516Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.195565Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.196205Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.196759Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.200455Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:15.202063Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:15.262265Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.263192Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.266506Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:15.279433Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.280210Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.283485Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:15.344907Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.344997Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.345833Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.346242Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.350293Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:15.662520Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.663351Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.667220Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:15.778494Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.779463Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.783000Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:16.044684Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.045667Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.049791Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T16:54:16.110529Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.111561Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.115790Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:16.528031Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.528853Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.534132Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:16.593647Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.594495Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.598762Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:16.860629Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.861643Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.865580Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:16.976426Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.976540Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.977322Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.977719Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.981047Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T16:54:16.982681Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:17.042581Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.042690Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.043551Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.044107Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.048533Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T16:54:17.050490Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T16:54:17.109411Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.109518Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.110303Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.110661Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.115242Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:17.225291Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.226075Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.229775Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:17.541765Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.542740Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.546216Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T16:54:17.607456Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.608259Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.611783Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:18.024121Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.024913Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.028613Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T16:54:18.089957Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.090739Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.094747Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:18.298498Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:18.306125Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.306908Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.310406Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:18.672480Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.673257Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.676700Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:18.988728Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.989450Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.992853Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:19.053953Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.054727Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.058508Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:19.106756Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:19.119588Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.119667Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.120333Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.120839Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.126569Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T16:54:19.128053Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:19.187709Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.188445Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.192712Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:19.221595Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.222380Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.225660Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T16:54:19.226451Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.227029Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.230401Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T16:54:19.258982Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.259668Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.263823Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:19.268271Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.268342Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.268954Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.269278Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.272864Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T16:54:19.274684Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:19.333943Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.334793Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.339000Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.339732Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T16:54:19.340453Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.341189Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.344698Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.346772Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T16:54:19.348482Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:19.409384Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.409475Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.409502Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.410122Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.410770Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.411271Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.415772Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T16:54:19.417624Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:19.418847Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T16:54:19.476633Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.476711Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.476748Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.477346Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.477671Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.478003Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.483043Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T16:54:19.486844Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:19.513439Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T16:54:19.543993Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.544098Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.544680Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.545044Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.548851Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:19.550712Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.551349Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.551916Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:19.555162Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:19.616064Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.616164Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.616726Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.617308Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.622822Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:19.623832Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:19.684000Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.684797Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.689027Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:19.749729Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.750482Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.754585Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T16:54:19.815173Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.979780Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.980546Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.984328Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T16:54:20.045199Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.159581Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.160277Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.163879Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:20.224847Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.539654Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.540400Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.544328Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T16:54:20.605323Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.769751Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.770372Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.775289Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T16:54:20.836055Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.301182Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.301934Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.306066Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T16:54:21.334641Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.335273Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.338941Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:21.339999Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.371965Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.488138Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.488658Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.492108Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T16:54:22.553351Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.553685Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.553860Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.554555Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.555242Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.558357Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:22.561824Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:22.563432Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:22.590625Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.590700Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.590947Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.591391Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.595099Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:22.596218Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:22.599671Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.631424Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.631503Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.631710Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.634821Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:22.696084Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.364696Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:32.612678Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:32.612678Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] 
[2026-06-04T16:54:32.612678Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:32.612789Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] 
[2026-06-04T16:54:32.612806Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:32.612813Z] [nf-cc6b6590bf100411cda311d1f698f990-84e9f-fzp2n] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec