[2026-06-04T16:54:20.178758Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:20.179394Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:20.179403Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:20.179407Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:20.179411Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXk9vH3n'
[2026-06-04T16:54:20.179415Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:20.179419Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:20.179423Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:20.179426Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T16:54:20.179430Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:20.179433Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:20.179437Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:20.179440Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:20.179444Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:20.180038Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:20.180127Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:20.185918Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:20.186768Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:20.187134Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:20.187435Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:20.187644Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.188448Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.188836Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.188919Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.189074Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.189205Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.189503Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.189815Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.189927Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.190122Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.191827Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192089Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:20.192335Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192412Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192528Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192592Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192703Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192765Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192875Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.192937Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193119Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193434Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193563Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193628Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193739Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.193799Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194202Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194265Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194376Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194441Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194578Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.194676Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195058Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195121Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195230Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195294Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195404Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195469Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195582Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195643Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195782Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195842Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.195954Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196057Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196521Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196588Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196723Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196786Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.196950Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197013Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197120Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197183Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197289Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197348Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197456Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.197592Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198045Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198109Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198213Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198273Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198380Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198440Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198548Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.198616Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.212301Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.212812Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.212879Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213030Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213099Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213180Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213245Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213353Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213420Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.213466Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:20.217538Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.218104Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.219685Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.220211Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.221755Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.222877Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.223118Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:20.223383Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.225992Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.226150Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:20.226624Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.231096Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:20.234592Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:20.235184Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:20.238654Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:20.321525Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:20.326570Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:20.345525Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.345597Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.345623Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.345646Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.345674Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.346402Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.346952Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.349340Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.350835Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:20.352355Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.352838Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:20.353054Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.356960Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:20.358621Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:20.359830Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:20.417960Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.418048Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.418792Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.419712Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.425551Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:20.426837Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:20.485047Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.485899Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.490180Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:20.951933Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.952793Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.956199Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:21.017551Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.018394Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.022033Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:21.183594Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.183704Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.184511Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.185037Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.189724Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:21.190915Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:21.250430Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.251346Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.255154Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:21.617312Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.618555Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.620531Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.621502Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.621883Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:21.624870Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:21.686598Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.687780Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.691152Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:21.719935Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.720954Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.723953Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:21.752946Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.753833Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.756709Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:21.918327Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.919090Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.922679Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:21.983645Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.984429Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.988531Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:22.049331Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.050084Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.053652Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:22.265197Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.265978Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.269313Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:22.380874Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.381002Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.382249Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.382614Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.387796Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:22.388901Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:22.599318Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.600084Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.603744Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:22.632744Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.633450Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.637256Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:22.637675Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.638287Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.641300Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:22.654503Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.655433Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.658519Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:22.687654Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.688856Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.689254Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.690684Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.694706Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:22.695507Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:22.755467Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.756468Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.759514Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:22.820702Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.822132Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.822478Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.824170Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.827269Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:22.828301Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:22.888242Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.889159Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.892386Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:22.953456Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.954273Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.957741Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:23.018891Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.019953Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.023940Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:23.084632Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.085494Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.088935Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:23.149918Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.150778Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.154500Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:23.215335Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.215429Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.216247Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.216737Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.220444Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:23.221902Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:23.281481Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.281603Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.282409Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.282836Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.286346Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:23.287364Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:23.347364Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.348176Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.351470Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:23.412543Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.413326Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.416486Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:23.477627Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.478761Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.481947Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:23.894127Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.894891Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.898400Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:23.959545Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.960361Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.963788Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:24.024737Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.025641Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.029548Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:24.090043Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.254442Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.254546Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.255190Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.255622Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.259255Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:24.260160Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:24.319963Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.320056Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.320088Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.320851Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.323654Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:24.384985Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.385083Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.385577Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.388745Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:24.417801Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.418327Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.420722Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.422454Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:24.484846Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.749504Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.749982Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.752940Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:24.815542Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.732390Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.732886Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.735557Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:25.766366Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.766676Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.766851Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.767567Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.768102Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.772949Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:25.773649Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:25.801835Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.802137Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.802582Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:25.803042Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.805259Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.805650Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:25.805853Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.808600Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:25.838010Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.838095Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.838334Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.840880Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:25.870545Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.745979Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:39.068392Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:39.068392Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] 
[2026-06-04T16:54:39.068392Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:39.068438Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] 
[2026-06-04T16:54:39.068444Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:39.068451Z] [nf-656143d845be0eaa4e372521c5d7fe46-babbf-wgcnb] [619_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec