File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/3635c092701047f5d7b33871d49390/.command.err
Size
53.7 KB
Attempt
[2026-06-04T16:54:01.701348Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:01.702288Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:01.702301Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:01.702306Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:01.702311Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqkhWAf'
[2026-06-04T16:54:01.702315Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:01.702321Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:01.702330Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:01.702334Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] memMb: 507674
[2026-06-04T16:54:01.702339Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:01.702346Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:01.702350Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:01.702354Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:01.702360Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:01.702732Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:01.702867Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:01.710078Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:01.710754Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:01.710878Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:01.711047Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:01.711287Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.712215Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.712319Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.712536Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.712811Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.712861Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.713022Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.713539Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.713681Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.713859Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.713992Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.714177Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.714313Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.715783Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.715896Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:01.716216Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716367Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716442Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716576Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716650Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716857Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.716937Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717070Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717147Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717376Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717660Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717791Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717865Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.717989Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718069Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718201Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718292Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718420Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718489Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718611Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718701Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.718919Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719277Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719403Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719476Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719599Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719668Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719793Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.719874Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.720010Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.720089Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.720220Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.720303Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.720748Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.721268Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.721470Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.721560Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.721750Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.721858Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.722054Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.722135Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.740177Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.740431Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.740555Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.740681Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.741445Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.741534Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.741792Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.742008Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.742207Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.742544Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.742807Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.743252Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.743473Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.743998Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.744296Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.744592Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.746450Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:01.746726Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.747014Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:01.754663Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:01.755243Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:01.757580Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:01.757961Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:01.760415Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:01.761949Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:01.763175Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:01.867082Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.867139Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.867173Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.867789Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.868041Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.868457Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:01.872412Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:01.873561Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:02.634823Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.635555Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.638244Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:02.643986Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:02.651115Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.651678Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.654109Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:02.815615Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.816696Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.819783Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:02.905678Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:02.930744Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.930879Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.931888Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.932221Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.934973Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:02.935584Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:02.964342Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.965308Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:02.967362Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:03.029202Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.030201Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.032586Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:03.294526Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.295555Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.297887Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:03.327447Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.328494Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.330915Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:03.642927Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.643923Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.646069Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:03.675769Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.676750Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.678980Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:03.708632Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.709568Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:03.711870Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:04.023926Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.024965Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.027551Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:04.088994Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.090048Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.092497Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:04.121915Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.122847Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.125156Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:04.154695Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.155664Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.158062Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:04.187552Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.188437Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.191492Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:04.252388Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.253298Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.256158Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:04.367315Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.367397Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.367959Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.368160Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.370899Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:04.397414Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:04.400002Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.400060Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.400593Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.400848Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.403634Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:04.404635Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:04.565065Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.565641Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.568026Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:04.597466Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.598162Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:04.600852Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:05.012741Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.013399Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.015759Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:05.327690Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.328304Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.330941Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:05.360009Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.360552Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.362725Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:05.392140Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.392201Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.392646Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.392835Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.396188Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:05.396374Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:05.408649Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.409106Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.411277Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:05.424651Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.425132Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.427216Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:05.440636Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.441103Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.443036Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:05.504858Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.504927Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.505409Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.505624Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.508088Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:05.509032Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:05.569355Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.569878Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.572119Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:05.601528Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.602042Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.604454Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:05.633706Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.633800Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.634326Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.634540Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.637191Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:05.637761Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:05.666491Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.666585Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.730725Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.731262Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.733623Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:05.763002Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.927306Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.927737Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:05.930010Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:05.959377Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:06.273639Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:06.274087Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:06.276510Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:06.305762Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271147Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.271628Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.273757Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:07.303278Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.517411Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.517868Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.520402Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:07.549491Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.815464Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.816116Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.818326Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:08.847854Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.848121Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.848267Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.848431Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.848650Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.852550Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:08.853435Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:08.878197Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:08.881903Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.881962Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.881987Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.882255Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.882484Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.884792Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:08.885265Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:08.914767Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.914828Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.915044Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.917385Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:08.946712Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.316482Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:20.590785Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:20.590785Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] 
[2026-06-04T16:54:20.590785Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:20.590857Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] 
[2026-06-04T16:54:20.590865Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:20.590872Z] [nf-bb3635c092701047f5d7b33871d49390-a76b8-bck7s] [729_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec