[2026-06-04T16:54:14.625459Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:14.626286Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:14.626303Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:14.626307Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:14.626313Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeXT9cA'
[2026-06-04T16:54:14.626318Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:14.626323Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:14.626327Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:14.626331Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:14.626335Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:14.626339Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:14.626342Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:14.626346Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:14.626350Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:14.626993Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:14.627075Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:14.633231Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:14.634034Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:14.634260Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:14.634522Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:14.634823Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.635633Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.635734Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.635808Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.635925Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.636068Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.636602Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.636791Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.637181Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.639573Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640078Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640278Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640347Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640502Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.640680Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:14.640771Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.641219Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.641395Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.641668Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.641888Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642082Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642150Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642259Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642325Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642452Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.642514Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.643424Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.643691Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.643813Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.643882Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644005Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644075Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644215Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644281Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644394Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644463Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644577Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644641Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.644886Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645226Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645343Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645429Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645552Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645616Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645725Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645787Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.645902Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.646114Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.646250Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.646486Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647061Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647132Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647244Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647311Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647423Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647497Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647615Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647680Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647794Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647859Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.647968Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.648045Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.648441Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.648899Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664454Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664573Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664644Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664815Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664887Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.664975Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.665044Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.665155Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.665226Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:14.665275Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:14.675493Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.676155Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.676761Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.677425Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.678141Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.679277Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.680698Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.681987Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.683608Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.686924Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:14.692481Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:14.699460Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:14.700081Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:14.705388Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:14.708479Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:14.711355Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:14.712888Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:14.860379Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.861298Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.865785Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:15.177455Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.178692Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.183211Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:15.795271Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.796555Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.800596Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:15.861753Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.862744Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.866799Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:16.027941Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.028082Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.029157Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.029870Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.035883Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:16.037524Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:16.096310Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.097427Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.101539Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:16.162346Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.163527Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.168361Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:16.228745Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.229839Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.233701Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:16.345135Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.346424Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.350525Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:16.612013Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.612164Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.612937Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.613341Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.617826Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:16.619272Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:16.680330Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.680418Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.681142Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.681616Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.684988Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:16.686848Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:16.746248Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.747060Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.750970Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:16.779589Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.780293Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.783370Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:16.812596Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.812661Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.813274Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.813546Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.817201Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:16.819253Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.820356Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.820650Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:16.823711Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:16.852802Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.853591Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.856522Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:16.885857Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.886813Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.890698Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:16.919510Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.920579Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.924148Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:16.928748Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.929553Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.933247Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:16.962180Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.963013Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.967413Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:16.996092Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.996236Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.997154Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:16.997664Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.001670Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:17.003217Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:17.032563Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.033536Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.034360Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.036215Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.039263Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.039675Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:17.042423Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.044098Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:17.045587Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:17.106951Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.107068Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.107723Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.110296Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.112794Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:17.114181Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:17.175668Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.175772Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.176816Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.177509Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.182662Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:17.183466Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:17.542822Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.543586Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.547732Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:17.608503Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.608583Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.609124Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.609572Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.613741Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:17.614927Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:17.674666Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.675323Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.678928Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:17.740193Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.740785Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.744785Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:17.774171Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.774829Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.778649Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:17.807330Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.808086Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.811924Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:17.816359Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.817096Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.821097Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:17.849687Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.850414Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.854260Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:17.915500Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.916479Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.920173Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:17.981444Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.981555Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.982153Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.982720Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.986808Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:18.015625Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.016483Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.020002Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:18.022089Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:18.024626Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.024706Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.025417Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.025962Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.030809Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:18.031368Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:18.058879Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.059592Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.063457Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:18.068046Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.100165Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.100259Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.100823Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.105106Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:18.165803Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.230324Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.231022Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.236220Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:18.295685Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.410232Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.411117Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:18.414892Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:18.475785Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.041626Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.041744Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.042422Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.043066Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.047229Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:19.048422Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:19.108110Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.108234Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.573615Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.574170Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.577921Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:19.638630Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.638863Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.639035Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.639574Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.640035Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.646764Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.648694Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:19.650111Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:19.705555Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.705670Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.705699Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.706061Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.706852Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.710005Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.711061Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:19.771410Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.771514Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.771792Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:19.774842Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:19.836521Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.301816Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:25.179572Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:25.179572Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] 
[2026-06-04T16:54:25.179572Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:25.179642Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] 
[2026-06-04T16:54:25.179648Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:25.179655Z] [nf-6e3add60ca345aae6e2f004e43a6f9be-08b7e-bqjqs] [667_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec