cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:185000001, elapsed 0.3s, est remaining 5.4s, peak mem 307MB, user 0.5s, sys 7.1s, output queue size 33
progress 10% @chr2:97000001, elapsed 0.5s, est remaining 4.7s, peak mem 478MB, user 1.0s, sys 14.0s, output queue size 37
progress 15% @chr2:223000001, elapsed 0.8s, est remaining 4.3s, peak mem 529MB, user 1.4s, sys 21.0s, output queue size 32
progress 20% @chr3:176000001, elapsed 1.0s, est remaining 4.0s, peak mem 655MB, user 1.8s, sys 28.0s, output queue size 18
progress 25% @chr4:102000001, elapsed 1.2s, est remaining 3.7s, peak mem 757MB, user 2.3s, sys 35.3s, output queue size 24
progress 30% @chr5:110000001, elapsed 1.5s, est remaining 3.5s, peak mem 799MB, user 2.6s, sys 42.6s, output queue size 14
progress 35% @chr6:56000001, elapsed 1.7s, est remaining 3.2s, peak mem 838MB, user 3.0s, sys 50.0s, output queue size 22
progress 40% @chr7:49000001, elapsed 2.0s, est remaining 3.0s, peak mem 883MB, user 3.4s, sys 57.5s, output queue size 22
progress 45% @chr8:73000001, elapsed 2.3s, est remaining 2.8s, peak mem 961MB, user 3.8s, sys 65.0s, output queue size 24
progress 50% @chr9:96000001, elapsed 2.5s, est remaining 2.5s, peak mem 1018MB, user 4.2s, sys 72.5s, output queue size 40
progress 55% @chr10:96000001, elapsed 2.8s, est remaining 2.3s, peak mem 1096MB, user 4.6s, sys 80.2s, output queue size 18
progress 60% @chr11:98000001, elapsed 3.0s, est remaining 2.0s, peak mem 1159MB, user 5.0s, sys 87.7s, output queue size 31
progress 65% @chr12:129000001, elapsed 3.3s, est remaining 1.8s, peak mem 1213MB, user 5.4s, sys 95.6s, output queue size 20
progress 70% @chr14:53000001, elapsed 3.6s, est remaining 1.5s, peak mem 1306MB, user 5.8s, sys 103.3s, output queue size 30
progress 75% @chr16:5000001, elapsed 3.8s, est remaining 1.3s, peak mem 1330MB, user 6.2s, sys 110.9s, output queue size 17
progress 80% @chr18:18000001, elapsed 4.1s, est remaining 1.0s, peak mem 1369MB, user 6.5s, sys 118.6s, output queue size 28
progress 85% @chr20:35000001, elapsed 4.3s, est remaining 0.8s, peak mem 1387MB, user 6.8s, sys 126.3s, output queue size 10
progress 90% @chrX:41000001, elapsed 4.8s, est remaining 0.5s, peak mem 2752MB, user 10.8s, sys 129.9s, output queue size 114
progress 95% @chrY:34000001, elapsed 5.0s, est remaining 0.3s, peak mem 2785MB, user 13.9s, sys 133.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.2s, est remaining 0.0s, peak mem 2791MB, user 25.5s, sys 138.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290597
output file size: 74586800
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.005 user 0.037 sys 0.044 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.026 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.844 user 17.301 sys 19.146 real
done: 1 calls 0.303 user 0.309 sys 0.615 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.002 sys 7.262 real
fetch: 3219322 calls 0.310 user 17.774 sys 16.853 real
fetch_reads: 3219322 calls 0.445 user 16.517 sys 16.959 real
fetch_ref: 13318 calls 0.038 user 0.057 sys 0.078 real
fetch_vcf: 13318 calls 1.175 user 0.119 sys 1.514 real
idle: 1621 calls 0.788 user 0.429 sys 105.271 real
init: 1 calls 0.004 user 0.001 sys 0.032 real
update: 13537 calls 6.578 user 1.371 sys 8.949 real
write: 3219322 calls 9.463 user 17.002 sys 26.678 real
overall: 2927443968 mem 29.345 user 139.797 sys 9.212 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.026 user 0.004 sys 0.027 real
done: 1 calls 0.038 user 0.022 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.305 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81870848 mem 0.062 user 0.051 sys 1.049 real