cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:61000001, elapsed 0.1s, est remaining 1.6s, peak mem 813MB, user 0.1s, sys 3.0s, output queue size 125
progress 10% @chr3:96000001, elapsed 0.2s, est remaining 1.5s, peak mem 813MB, user 0.2s, sys 12.1s, output queue size 273
progress 15% @chr4:77000001, elapsed 0.2s, est remaining 1.3s, peak mem 813MB, user 0.4s, sys 21.7s, output queue size 435
progress 20% @chr5:64000001, elapsed 0.3s, est remaining 1.2s, peak mem 813MB, user 0.6s, sys 33.5s, output queue size 597
progress 25% @chr6:53000001, elapsed 0.4s, est remaining 1.1s, peak mem 813MB, user 0.9s, sys 49.9s, output queue size 758
progress 30% @chr6:1, elapsed 0.4s, est remaining 1.0s, peak mem 813MB, user 1.2s, sys 67.8s, output queue size 919
progress 35% @chr8:1000001, elapsed 0.5s, est remaining 0.9s, peak mem 813MB, user 1.7s, sys 84.6s, output queue size 1080
progress 40% @chr7:119000001, elapsed 0.5s, est remaining 0.8s, peak mem 813MB, user 2.1s, sys 99.7s, output queue size 1242
progress 45% @chr7:92000001, elapsed 0.6s, est remaining 0.7s, peak mem 813MB, user 2.5s, sys 112.8s, output queue size 1404
progress 50% @chr10:68000001, elapsed 0.6s, est remaining 0.6s, peak mem 813MB, user 2.7s, sys 130.1s, output queue size 1564
progress 55% @chr10:35000001, elapsed 0.7s, est remaining 0.6s, peak mem 813MB, user 3.2s, sys 145.0s, output queue size 1452
progress 60% @chr13:96000001, elapsed 0.8s, est remaining 0.5s, peak mem 813MB, user 3.8s, sys 159.3s, output queue size 1615
progress 65% @chr14:74000001, elapsed 0.8s, est remaining 0.4s, peak mem 813MB, user 4.2s, sys 175.3s, output queue size 1776
progress 70% @chr16:25000001, elapsed 0.9s, est remaining 0.4s, peak mem 813MB, user 4.7s, sys 191.2s, output queue size 1937
progress 75% @chr18:35000001, elapsed 0.9s, est remaining 0.3s, peak mem 813MB, user 5.4s, sys 206.3s, output queue size 2099
progress 80% @chr20:46000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 5.9s, sys 219.1s, output queue size 2261
progress 85% @chrX:125000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 6.2s, sys 233.2s, output queue size 2434
progress 90% @chr18:18000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 6.6s, sys 252.6s, output queue size 2814
progress 95% @chr21:42000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 6.9s, sys 278.2s, output queue size 3341
progress 100% @HLA-DQA1*04:01:02:01:1, elapsed 1.3s, est remaining 0.0s, peak mem 813MB, user 7.2s, sys 357.7s, output queue size 6170
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.009 real
"predict_filter": 136 calls 0.002 user 0.005 sys 0.054 real
advance: 3219322 calls 0.379 user 111.186 sys 113.947 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.003 sys 1.339 real
fetch_ref: 384 calls 0.002 user 0.120 sys 0.999 real
idle: 20633 calls 0.656 user 1.239 sys 711.293 real
init: 1 calls 0.375 user 0.117 sys 0.703 real
overall: 852627456 mem 8.873 user 372.650 sys 3.313 real