File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/dd8361f096f0652257d7634f006daf/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-06-04T16:54:07.010329Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:07.043018Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:07.043057Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:07.043064Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:07.043069Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXy46R63'
[2026-06-04T16:54:07.043073Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:07.043078Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:07.043082Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:07.043086Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:07.043089Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:07.043093Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:07.043096Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:07.043100Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:07.043104Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:07.044035Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:07.044184Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:07.050108Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:07.051018Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:07.051266Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:07.051514Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:07.051879Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.052776Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.052874Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.052977Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.053375Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.053695Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.053817Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054136Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054220Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054395Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054471Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054589Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.054654Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.055390Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.055744Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.057995Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:07.058177Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.058274Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.058394Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.058457Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.058660Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.058928Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059269Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059346Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059465Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059532Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059648Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059713Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059861Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.059929Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.060040Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.060117Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.060524Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.060818Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.060938Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061009Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061123Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061189Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061305Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061374Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061487Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061548Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061662Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061754Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.061988Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062383Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062512Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062578Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062759Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062824Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.062933Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.063003Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.063124Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.063186Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.063298Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.063361Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.079660Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.079975Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080046Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080211Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080288Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080386Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080457Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080568Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080640Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:07.080691Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:07.088833Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.089360Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.089817Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.090397Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.091114Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.091916Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.092569Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.094614Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.095678Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:07.100982Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:07.102353Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:07.105370Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:07.110486Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:07.111193Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:07.115729Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:07.116926Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:08.166510Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.167202Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.170835Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:08.171435Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.172054Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.175192Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T16:54:08.286566Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.286646Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.287651Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.288210Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.292854Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:08.293527Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:08.386833Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:08.402987Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.403091Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.403785Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.404225Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.409045Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:08.436958Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.437633Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:08.441599Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:09.455607Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.456341Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.460061Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:09.546806Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:09.571196Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.571951Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.575554Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T16:54:09.636570Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.637283Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.641772Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:10.254117Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.254979Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.260319Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T16:54:10.320536Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.320633Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.321353Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.322122Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.327862Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T16:54:10.329329Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:10.388333Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.389160Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.394682Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:10.454845Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.455788Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.460861Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T16:54:10.472953Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.473703Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.478582Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:10.491198Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.491947Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.495603Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:10.508328Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.508991Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.512715Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:10.574012Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.574111Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.574908Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.575517Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.580481Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T16:54:10.632693Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:10.642939Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.643620Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.647628Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:10.648196Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.648753Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.652605Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T16:54:10.713473Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.713590Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.714364Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.715437Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.720908Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T16:54:10.722195Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:10.783757Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.784704Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.789265Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:10.801032Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.801635Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.805953Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:10.818337Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.818972Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.822171Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:10.883881Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.883996Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.884833Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.885374Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.889782Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T16:54:10.891097Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:10.918834Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.919492Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.923030Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T16:54:10.927927Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.928489Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.931652Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T16:54:10.992909Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.993029Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.993597Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.993944Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.998482Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T16:54:11.000268Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:11.059739Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.059829Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.060390Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.060751Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.065844Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:11.067259Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:11.477237Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.477958Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.482230Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:11.843475Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.844433Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.848563Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T16:54:11.909435Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.910245Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.914074Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T16:54:11.974932Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.975561Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.979332Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T16:54:12.040400Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.040971Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.044595Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T16:54:12.106122Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.270895Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.271391Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.275686Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T16:54:12.336097Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.651007Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.651670Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.655477Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T16:54:12.716488Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.482683Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.483313Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.487778Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T16:54:13.548736Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.580890Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.581528Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.585501Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T16:54:13.646409Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.911534Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.912082Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.915979Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T16:54:13.976932Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.191686Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.192215Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.196094Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:14.257444Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.321755Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.322283Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.325902Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T16:54:14.387352Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.387668Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.387870Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.388272Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.388766Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.394216Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.395710Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:14.396703Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:14.455209Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.455299Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.455341Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.455627Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.456318Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.460992Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.461854Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:14.491729Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.495080Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.495276Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.498692Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:14.559831Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:17.634910Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:25.931976Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:25.931976Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] 
[2026-06-04T16:54:25.931976Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:25.932074Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] 
[2026-06-04T16:54:25.932082Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:25.932089Z] [nf-f2dd8361f096f0652257d7634f006daf-3556e-l2dck] [633_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec