Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6987106391a7258fd78808743484d9/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/199af2584434d7864363d297762b2f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6987106391a7258fd78808743484d9/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/199af2584434d7864363d297762b2f/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQu09wm/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQu09wm/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQu09wm/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T16:54:20.269650Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:20.270928Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:20.270937Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:20.270944Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:20.270949Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQu09wm'
[2026-06-04T16:54:20.270953Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:20.270959Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:20.270963Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:20.270969Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T16:54:20.270973Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:20.270978Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:20.270982Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:20.270986Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:20.270991Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:20.271469Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:20.271547Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:20.278189Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:20.278868Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:20.279100Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:20.279306Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:20.279525Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.280087Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.280365Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.280768Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.280965Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.281192Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.281595Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.284081Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.284986Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:20.285269Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.285674Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.285960Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286286Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286514Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286640Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286711Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286832Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.286906Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287027Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287098Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287316Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287392Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287552Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.287763Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.288164Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.288448Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.288992Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289064Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289191Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289265Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289385Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289491Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289618Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289688Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289810Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.289883Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.290544Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.290758Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.290895Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.290962Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.291091Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.291159Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.291285Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.291360Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.292532Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.293099Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.293577Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.293729Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.293853Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.293924Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294047Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294118Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294236Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294301Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294434Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294514Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295019Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295520Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295652Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295730Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295867Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.295940Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296073Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296152Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296277Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.296355Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309237Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309347Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309425Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309637Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309718Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309819Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.309893Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.310020Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.310103Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:20.311549Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:20.313642Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.314449Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.315028Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.315657Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.316489Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.319283Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.319621Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:20.322090Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.324790Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:20.325026Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.325292Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:20.325759Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.329430Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:20.332750Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:20.337859Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:20.341053Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:20.342918Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:20.442970Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.443904Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.448110Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:20.460622Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.461840Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.466839Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:20.576632Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.577898Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.581485Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:21.594092Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.595290Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.598486Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T16:54:21.659616Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.660917Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.663938Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:21.925589Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.926869Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:21.930605Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:22.191763Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.193129Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.196423Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:22.658518Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.658629Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.659953Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.660414Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.664262Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T16:54:22.665680Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T16:54:22.725071Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.725163Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.726700Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.727154Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.731137Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T16:54:22.732285Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T16:54:22.743547Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.743619Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.744690Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.745014Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.748738Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T16:54:22.806402Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T16:54:22.809509Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.809590Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.809641Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.809673Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.811236Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.811579Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.811851Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.813020Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.816829Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T16:54:22.819146Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:22.820993Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:22.822442Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:22.877636Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.879199Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.882603Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T16:54:22.911671Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.912822Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.915594Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T16:54:22.944905Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.945896Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:22.948904Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:23.010039Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.011127Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.014946Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:23.075982Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.077084Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.080607Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:23.392222Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.393309Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.396521Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T16:54:23.457792Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.458586Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:23.462596Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:24.275671Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.276590Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.279896Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T16:54:24.341173Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.342060Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.345240Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:24.807675Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.808440Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.811887Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:24.840938Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.841738Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.845012Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T16:54:24.906179Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.906971Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:24.909962Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:25.121878Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.122625Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.125557Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T16:54:25.156513Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.157238Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.159547Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.160357Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.160512Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T16:54:25.163442Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:25.225087Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.225845Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.229021Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T16:54:25.290783Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.291611Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.294428Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.295177Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.295453Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:25.298485Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T16:54:25.359908Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.360646Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.363944Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T16:54:25.425208Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.425887Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.429776Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:25.841766Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.842407Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.845649Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T16:54:25.907219Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.907912Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.911608Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:25.972501Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.972590Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.973144Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.975227Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.977357Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T16:54:25.978498Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T16:54:26.040427Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.040527Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.041182Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.041904Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.045590Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:26.046652Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:26.157083Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.157755Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.161579Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:26.372846Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.373483Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.376536Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T16:54:26.438340Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.438971Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.442341Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T16:54:26.503561Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.504160Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.507297Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T16:54:26.536353Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.536927Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.540057Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T16:54:26.545150Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.545720Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.549101Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:26.578245Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.993499Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.994016Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.997045Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:27.059522Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.060102Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.063463Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T16:54:27.124154Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.288516Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.289033Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.292101Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T16:54:27.354564Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.669401Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.669930Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.672979Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T16:54:27.703478Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.868013Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.868537Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.871380Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T16:54:27.932840Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.964852Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.965331Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.968239Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T16:54:28.031008Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.496592Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.497038Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.499871Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T16:54:28.529210Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.245010Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.245491Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.247843Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T16:54:29.277430Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.277679Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.277805Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.278348Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.278655Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.281504Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:29.283192Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:29.283986Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:29.311059Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.311115Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.311135Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.311325Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.312877Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.314394Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:29.315345Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:29.346174Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.346245Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.346447Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.348754Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:29.378507Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.844768Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:39.159595Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:39.159595Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] 
[2026-06-04T16:54:39.159595Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:39.159654Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] 
[2026-06-04T16:54:39.159664Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:39.159672Z] [nf-9d199af2584434d7864363d297762b2f-95e99-wnqnl] [615_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec