Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/f40be8f4f1a7c5696bccae0fc7ba6c/negative_somatic_control_2.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/b1b920ec854048897ea74673acc243/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/b1b920ec854048897ea74673acc243/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: negative_somatic_control_2.snv_indel.phased.vcf.gz.csi: No such file or directory