cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.1s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 1755
progress 10% @chr2:19969480, elapsed 0.1s, est remaining 1.0s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 193
progress 15% @chr2:189056973, elapsed 0.2s, est remaining 0.9s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 6589
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 8307
progress 25% @chr4:88457270, elapsed 0.3s, est remaining 0.8s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 5653
progress 30% @chr5:146514854, elapsed 0.3s, est remaining 0.7s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 15703
progress 35% @chr6:127314816, elapsed 0.4s, est remaining 0.7s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 8827
progress 40% @chr7:128350856, elapsed 0.4s, est remaining 0.6s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 18321
progress 45% @chr9:710804, elapsed 0.4s, est remaining 0.5s, peak mem 277MB, user 0.0s, sys 0.0s, output queue size 7258
progress 50% @chr10:32022020, elapsed 0.5s, est remaining 0.5s, peak mem 286MB, user 0.0s, sys 0.0s, output queue size 17217
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 27671
progress 60% @chr12:22055149, elapsed 0.6s, est remaining 0.4s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 37220
progress 65% @chr13:49220338, elapsed 0.6s, est remaining 0.3s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 10108
progress 70% @chr15:42684116, elapsed 0.7s, est remaining 0.3s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 20155
progress 75% @chr16:30759654, elapsed 0.7s, est remaining 0.2s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 29708
progress 80% @chr17:42501197, elapsed 0.8s, est remaining 0.2s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 40409
progress 85% @chr19:5654368, elapsed 0.8s, est remaining 0.1s, peak mem 322MB, user 0.0s, sys 0.0s, output queue size 50806
progress 90% @chr19:55642509, elapsed 0.8s, est remaining 0.1s, peak mem 322MB, user 0.0s, sys 0.0s, output queue size 60306
progress 95% @chr22:37024192, elapsed 1.3s, est remaining 0.1s, peak mem 2464MB, user 6.6s, sys 3.1s, output queue size 3248
progress 100% @chr6_GL000254v2_alt:3891538, elapsed 1.3s, est remaining 0.0s, peak mem 2464MB, user 6.8s, sys 3.1s, output queue size 6334
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290597
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.915 user 0.093 sys 2.303 real
done: 1 calls 0.409 user 0.130 sys 0.538 real
execute: 1 calls 0.003 user 0.010 sys 1.305 real
fetch_reads: 208647 calls 0.084 user 0.001 sys 0.182 real
fetch_ref: 2072 calls 0.031 user 0.007 sys 0.025 real
fetch_vcf: 2072 calls 0.876 user 0.039 sys 0.968 real
idle: 92 calls 0.003 user 0.001 sys 31.741 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.710 user 2.961 sys 8.239 real
overall: 2584571904 mem 10.767 user 9.068 sys 2.690 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory