File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/c329559a43d23bb43a5418d997cbbd/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0_6l92eu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 16:59:09,744 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 16:59:10,688 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 16:59:10,879 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 16:59:11,953 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 16:59:12,130 - cnv_pipe.batch.run_model - INFO - Processing cluster 588 with 196 probes
2026-06-04 16:59:12,588 - cnv_pipe.batch.run_model.cluster588 - INFO - Child process started for cluster 588 with 196 probes
2026-06-04 17:00:20,781 - cnv_pipe.batch.run_model.cluster588 - INFO - Child process finished cluster 588. Wrote cluster_588_samples.csv and cluster_588_params.csv
2026-06-04 17:00:20,782 - cnv_pipe.batch.run_model - INFO - Cluster 588 finished in 68.65 seconds. Status: SUCCESS